STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12342Hypothetical protein-transmembrane prediction. (222 aa)    
Predicted Functional Partners:
RB12340
Hypothetical protein-transmembrane prediction.
       0.809
RB12338
Hypothetical protein.
       0.773
RB12343
Sucrose phosphorylase; PMID: 1368718 best DB hits: BLAST: swissprot:P76041; SUCP_ECOLI PUTATIVE SUCROSE PHOSPHORYLASE; E=1e-123 pir:H64879; probable membrane protein b1309 - Escherichia coli; E=1e-123 ddbj:BAA14878.1; (D90768) Sucrose phosphorylase (EC 2.4.1.7); E=1e-121 COG: ycjM; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=0.0025.
       0.768
RB12344
Predicted glycosyltransferase; Best DB hits: BLAST: pir:G72278; hypothetical protein - Thermotoga maritima (strain MSB8); E=5e-43 ddbj:BAA25653.1; (AB005901) deduced glucosyltransferase; E=1e-07 pir:F64500; probable hexosyltransferase (EC 2.4.1.-) MJ1607 -; E=7e-05 COG: TM1230; COG0438 Predicted glycosyltransferases; E=5e-44 PFAM: PF02843; Phosphoribosylglycinamide syn; E=0.45 PF00534; Glycosyl transferases group 1; E=0.018.
       0.768
RB8959
Hypothetical protein-signal peptide prediction.
  
 
 0.659
RB12347
Similar to hydrolase; PMID: 7826004 best DB hits: BLAST: pir:G75522; hydrolase, CbbYCbbZ/GpH/YieH family - Deinococcus; E=0.045 swissprot:Q94915; REG2_DROME RHYTHMICALLY EXPRESSED GENE 2 PROTEIN; E=0.14 pir:E75169; hypothetical protein PAB2019 - Pyrococcus abyssi (strain; E=0.15 COG: DR0414; COG1011 Predicted hydrolases of the HAD superfamily; E=0.004 PFAM: PF00702; haloacid dehalogenase-like hydrolas; E=2e-07.
       0.626
fxsA
Similar to FxsA protein; PMID: 10497016 PMID: 11932238 best DB hits: BLAST: pir:E82044; fxsA protein VC2696 [imported] - Vibrio cholerae (group; E=0.013 ddbj:BAB06881.1; (AP001517) BH3162~unknown conserved protein; E=0.14 pir:C70004; conserved hypothetical protein ytzA - Bacillus subtilis; E=0.84 COG: VC2696; COG3030 Uncharacterized ACR; E=0.001.
       0.626
RB12337
Prolyl endopeptidase; PMID: 8370677 best DB hits: BLAST: pir:B75267; prolyl endopeptidase - Deinococcus radiodurans (strain; E=0.0 gb:AAD34991.1; (AF143951) prolyl endopeptidase [Aeromonas; E=1e-173 gb:AAF02211.1; (AF065429) prolyl endopeptidase [Aeromonas; E=1e-173 COG: DR2503; COG1505 Serine proteases of the peptidase family S9A; E=0.0 PA1304; COG1770 Protease II (serine protease PtrB); E=7e-45 NMB1877; COG1505 Serine proteases of the peptidase family S9A; E=2e-38 PFAM: PF02897; Prolyl oligopeptidase, N-termi; E=2.7e-149 PF00326; Prolyl oligopeptidase family; E=2.6e-40.
  
    0.599
RB12351
Similar to c-type cytochrome; PMID: 1646017 best DB hits: BLAST: embl:CAA57910.1; (X82563) c-type cytochrome [Synechocystis sp.]; E=0.77 PFAM: PF00034; Cytochrome c; E=5.6e-05.
  
    0.478
RB10702
Similar to biopolymer transport exbD2 protein; PMID: 9781885 best DB hits: BLAST: pir:E82726; conserved hypothetical protein XF1080 [imported] -; E=0.007 swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.043 pir:B82858; biopolymer transport ExbD1 protein XF0011 [imported] -; E=0.16 COG: XF1080; COG0848 Biopolymer transport protein; E=7e-04 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=5.3e-06.
   
   0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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