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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12367Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00428; 60s Acidic ribosomal protein; E=0.77. (669 aa)    
Predicted Functional Partners:
RB12371
Hypothetical protein.
       0.572
pcrA
ATP-dependent DNA helicase; PMID: 8419285 best DB hits: BLAST: gb:AAK05218.1; AE006344_7 (AE006344) ATP-dependent helicase PcrA; E=1e-131 swissprot:Q53727; PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA; E=1e-127 swissprot:Q9S3Q0; PCRA_LEUCI ATP-DEPENDENT DNA HELICASE PCRA; E=1e-127 COG: BS_yerF; COG0210 Superfamily I DNA and RNA helicases; E=1e-127 PFAM: PF00580; UvrD/REP helicase; E=2.4e-177.
       0.505
RB12362
Peroxiredoxin; Best DB hits: BLAST: pir:S74867; hypothetical protein sll1159 - Synechocystis sp. (strain; E=2e-23 pir:T36936; hypothetical protein SCJ1.03c - Streptomyces coelicolor; E=1e-17 pir:E72332; thioredoxin peroxidase (EC 1.11.1.-) TM0780 [similarity]; E=1e-05 COG: sll1159; COG1225 Peroxiredoxins; E=2e-24 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-04 bcp; COG1225 Peroxiredoxins; E=4e-04.
       0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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