STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12404Hypothetical protein. (97 aa)    
Predicted Functional Partners:
RB12403
Hypothetical protein.
       0.773
RB12400
Best DB hits: BLAST: pir:G70414; conserved hypothetical protein aq_1327 - Aquifex; E=1e-08 pir:G72297; conserved hypothetical protein - Thermotoga maritima; E=5e-08 pir:T34718; probable integral membrane protein - Streptomyces; E=9e-07 COG: aq_1327; COG0705 Uncharacterized membrane protein (homolog of; E=1e-09 PFAM: PF01694; Rhomboid family; E=3.1e-12.
       0.768
nupG
Nucleoside-transport system protein; PMID: 3311747 best DB hits: BLAST: gb:AAG57155.1; AE005436_2 (AE005436) putative nucleoside permease; E=5e-53 swissprot:P76417; YEGT_ECOLI PUTATIVE NUCLEOSIDE TRANSPORTER YEGT; E=8e-53 pir:C65082; nucleoside-transporting protein nupG - Escherichia coli; E=6e-30 COG: yegT; COG0477 Permeases of the major facilitator superfamily; E=7e-54.
       0.569
RB12398
Hypothetical protein.
       0.452
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.