STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12409Conserved hypothetical protein; PMID: 10216867 best DB hits: BLAST: gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.007. (1032 aa)    
Predicted Functional Partners:
RB9424
Best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=4e-10 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=6e-09 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-08 COG: BB0175; COG1721 Uncharacterized ACR; E=3e-11 PFAM: PF01882; Protein of unknown function DUF58; E=3.1e-15.
 
     0.801
RB9421
Similar to lipoprotein; Best DB hits: BLAST: embl:CAB75310.1; (AL139164) putative lipoprotein [Streptomyces; E=0.011.
     0.798
RB7502
Hypothetical protein; PMID: 11932238.
  
     0.774
RB1216
Probable permease component of an ABC-transporter; PMID: 9403685 best DB hits: BLAST: pir:H70193; membrane spanning protein homolog - Lyme disease; E=6e-04 gb:AAD39630.1; AF033858_13 (AF033858) putative ABC transporter; E=0.074 pir:D69049; conserved hypothetical protein MTH1371 -; E=0.15 COG: BB0753; COG1277 Permease component of an ABC-transporter; E=5e-05.
 
     0.773
RB12408
Hypothetical protein.
       0.773
RB12414
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB10354
Hypothetical protein-putative transmembrane protein.
 
     0.769
RB7501
Conserved hypothetical protein; PMID: 97061201 best DB hits: BLAST: pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=3e-11 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-10 embl:CAB90930.1; (AL355774) putative lipoprotein [Streptomyces; E=1e-09 COG: slr2013; COG1721 Uncharacterized ACR; E=3e-12 PFAM: PF01882; Protein of unknown function DUF58; E=2.5e-18.
 
     0.752
RB279
Best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp; E=5e-49 pir:H71008; probable ATP-binding transport protein - Pyrococcus; E=8e-43 pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=1e-42 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=5e-50 yadG; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-34 BH1054_2; COG0842 Permease component of an ABC-transporter; E=1e-34 PFAM: PF02223; Thymidylate kinase; E=0.064 PF00005; ABC transporter; E=2.4e-45.
  
     0.743
RB7166
ABC transporter, ATP-binding protein; PMID: 9389475 best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp; E=3e-48 pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=2e-42 gb:AAB90107.1; (AE001025) ABC transporter, ATP-binding protein; E=2e-40 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=2e-49 BH1054_2; COG0842 Permease component of an ABC-transporter; E=6e-41 PA3672; COG1131 ABC-type multidrug transport system, ATPase; E=2e-39 PFAM: PF00005; ABC transporter; E=9.2e-45.
  
     0.656
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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