STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12422Hypothetical protein; PMID: 12004073. (190 aa)    
Predicted Functional Partners:
RB12421
Conserved hypothetical protein-putative adenylate cyclase regulatory protein; PMID: 2065652 PMID: 1905979 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=3e-15 gb:AAG17034.1; AF187980_1 (AF187980) Partner of Paired [Drosophila; E=8e-09 embl:CAB95333.1; (AL359782) possible putative adenylate cyclase; E=2e-06.
     
 0.780
RB12424
Potassium channel; PMID: 1550672 best DB hits: BLAST: pir:A82682; ion transporter XF1426 [imported] - Xylella fastidiosa; E=1e-48 pir:E75470; probable ion transporter - Deinococcus radiodurans; E=5e-42 pir:B83459; probable potassium channel PA1496 [imported] -; E=1e-36 COG: XF1426; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=1e-49 APE0955; COG1226 Kef-type K+ transport systems, predicted; E=7e-09 BH3340; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=4e-05 PFAM: PF01145; SPFH domain / Band 7 family; E=0.42 PF00520; Ion transport protein; E=5.1e-21.
       0.773
tadA-2
Cytosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.675
RB12416
Hypothetical protein-signal peptide and transmembrane prediction.
       0.671
RB12426
Hypothetical protein-transmembrane prediction.
       0.664
pepN
Probable aminopeptidase; PMID: 1765107 best DB hits: BLAST: embl:CAC16707.1; (AL450289) putative metallopeptidase; E=2e-08 gb:AAB68919.1; (U00062) Aap1'p: argininealanine aminopeptidase; E=8e-05 swissprot:P32454; APE2_YEAST AMINOPEPTIDASE II (YSCII) -----; E=1e-04 COG: YHR047c; COG0308 Aminopeptidase N; E=8e-06.
  
     0.638
RB1125
PMID: 8181764 best DB hits: BLAST: pir:H82381; toxin secretion ATP-binding protein VCA1084 [imported] -; E=2e-12 pir:S75806; hemolysin secretion protein hlyB - Synechocystis sp; E=6e-12 gb:AAD21059.1; (AF119150) RtxB protein [Vibrio cholerae]; E=6e-12 COG: VCA1084; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain; E=2e-13 sll1180_2; COG2274 ABC-type bacteriocin/lantibiotic exporters,; E=5e-13 VC1448; COG1132 ABC-type multidrug/protein/lipid transport system,; E=6e-13 PFAM: PF00664; ABC transporter transmembrane re; E=0.046 PF00005; ABC transporter; E=6.8e-06.
  
     0.592
RB10991
Best DB hits: BLAST: pir:T36405; probable marR-family transcription regulator -; E=2e-04 gb:AAG00065.1; (U18133) CbaR [Comamonas testosteroni]; E=8e-04 pir:T29126; hypothetical protein SC1F2.17 - Streptomyces coelicolor; E=0.002 COG: XF0216; COG1846 Transcriptional regulators; E=4e-04 PFAM: PF01047; MarR family; E=2.9e-14.
  
     0.524
RB12415
Conserved hypothetical protein-putative acetobutylicum phosphotransbutyrylase; PMID: 10484179 best DB hits: BLAST: gb:AAG18715.1; (AE004976) Vng0080h [Halobacterium sp. NRC-1]; E=2e-04 ddbj:BAB07426.1; (AP001519) acetobutylicum phosphotransbutyrylase; E=0.005.
       0.501
RB2339
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:D75339; hypothetical protein - Deinococcus radiodurans (strain; E=9e-22.
  
   
 0.490
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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