STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12428Conserved hypothetical protein; PMID: 9537320 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.20 pir:E69078; conserved hypothetical protein MTH1585 -; E=0.34 ddbj:BAB05388.1; (AP001512) BH1669~unknown conserved protein; E=0.58 PFAM: PF00515; TPR Domain; E=0.15. (322 aa)    
Predicted Functional Partners:
RB10641
Probable beta-subunit of geranylgeranyltransferase or farnesyltransferase; Best DB hits: BLAST: ddbj:BAB10039.1; (AB007727) Rab geranylgeranyltransferase, beta; E=5e-05 swissprot:P41992; PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE; E=7e-05 swissprot:Q04903; PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA; E=0.005 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.4e-08.
  
     0.755
RB12006
Probable G protein-coupled receptor LGR4; PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1; (AF301417) GU1 [Trypanosoma brucei]; E=2e-08 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=1e-06 gb:AAC77910.1; (AF061443) G protein-coupled receptor LGR4 [Rattus; E=6e-05.
  
     0.710
RB5932
Polyprenyl synthetase; PMID: 8182085 PMID: 2198286 best DB hits: BLAST: pir:E71101; probable geranylgeranyl pyrophosphate synthetase -; E=9e-17 gb:AAD47627.1; (AF153713) octylprenyl diphosphate synthase-like; E=1e-16 swissprot:Q53479; IDSA_METTM BIFUNCTIONAL SHORT CHAIN ISOPRENYL; E=2e-15 COG: PH1072; COG0142 Geranylgeranyl pyrophosphate synthase; E=9e-18 AF0204; COG1852 Uncharacterized ArCR; E=3e-13 NMB0261; COG0142 Geranylgeranyl pyrophosphate synthase; E=4e-13 PFAM: PF01976; Protein of unknown function D; E=6e-24 PF00348; Polyprenyl synthetase; E=3.4e-09.
  
     0.697
RB12808
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.681
RB614
PMID: 7601151 PMID: 8654419 best DB hits: BLAST: pir:S52317; quinohemoprotein ethanol dehydrogenase (EC 1.1.99.-); E=0.006 gb:AAF86335.1; (AF277373) terahydrofurfuryl alcohol dehydrogenase; E=0.36 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.76 PFAM: PF01011; PQQ enzyme repeat; E=0.29.
  
     0.680
RB7621
Probable ferredoxin MJ0251-putative Fe-S containing oxidoreductase; Best DB hits: BLAST: swissprot:Q57699; FER5_METJA PUTATIVE FERREDOXIN MJ0251 -----; E=8e-10 pir:B72286; ferredoxin - Thermotoga maritima (strain MSB8) -----; E=9e-09 pir:B72206; ferredoxin - Thermotoga maritima (strain MSB8) -----; E=1e-05 COG: MJ0251; COG1146 Ferredoxin 3; E=7e-11 TM1292; COG1149 MinD superfamily P-loop ATPase containing an; E=0.002 AF0427; COG1146 Ferredoxin 3; E=0.004 PFAM: PF00037; 4Fe-4S binding domain; E=0.0025.
  
     0.653
upK
Probable receptor protein kinase; Best DB hits: BLAST: embl:CAC20842.1; (AJ250467) receptor protein kinase [Pinus; E=6e-04 pir:T10659; probable serinethreonine-specific protein kinase (EC; E=0.019 embl:CAB95344.1; (AL359782) possible putative adenylate cyclase; E=0.081.
  
     0.646
RB12303
Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.
  
     0.638
RB6400
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00397; WW domain; E=0.54.
  
     0.638
RB3003
PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.005 gb:AAG31643.1; AF309488_1 (AF309488) methanol dehydrogenase large; E=0.009 pir:F72237; conserved hypothetical protein - Thermotoga maritima; E=0.29 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.00081.
  
     0.635
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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