Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
RB12429Hypothetical protein-transmembrane prediction. (228 aa)    
Predicted Functional Partners:
RB12428
Conserved hypothetical protein; PMID: 9537320 best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=0.20 pir:E69078; conserved hypothetical protein MTH1585 -; E=0.34 ddbj:BAB05388.1; (AP001512) BH1669~unknown conserved protein; E=0.58 PFAM: PF00515; TPR Domain; E=0.15.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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