Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12468Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00520; Ion transport protein; E=1.8e-05 PF01578; Cytochrome C assembly protein; E=0.81. (677 aa)    
Predicted Functional Partners:
RB1495
Best DB hits: BLAST: pir:T34965; probable membrane protein - Streptomyces coelicolor; E=2e-09 gb:AAB06263.1; (L39876) ORF1; PepX [Caldicellulosiruptor; E=4e-04 pir:E75460; conserved hypothetical protein - Deinococcus radiodurans; E=0.002 COG: DR0919; COG1721 Uncharacterized ACR; E=2e-04 PFAM: PF01882; Protein of unknown function DUF58; E=7.1e-20.
 
     0.789
RB12464
Similar to potassium channel protein; PMID: 10952301 best DB hits: BLAST: pir:C82490; probable potassium channel protein VCA0194 [imported] -; E=0.039 COG: VCA0194; COG1226 Kef-type K+ transport systems, predicted; E=0.004.
       0.773
RB12471
Hypothetical protein.
       0.741
RB1950
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.730
RB2247
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58.
  
     0.726
RB3479
Hypothetical protein-putative general secretory pathway protein; PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021.
  
     0.649
RB12137
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: swissprot:Q9KSW3; YB43_VIBCH HYPOTHETICAL PROTEIN VC1143 -----; E=2e-07 swissprot:Q9I0L7; YQ21_PSEAE HYPOTHETICAL PROTEIN PA2621; E=2e-04 swissprot:P75832; YLJA_ECOLI PROTEIN YLJA ----- pir: A64827; E=9e-04 COG: VC1143; COG2127 Uncharacterized ACR; E=2e-08 PFAM: PF02617; Uncharacterized ACR, COG2127; E=1.6e-08; Belongs to the ClpS family.
  
     0.624
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.623
RB10641
Probable beta-subunit of geranylgeranyltransferase or farnesyltransferase; Best DB hits: BLAST: ddbj:BAB10039.1; (AB007727) Rab geranylgeranyltransferase, beta; E=5e-05 swissprot:P41992; PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE; E=7e-05 swissprot:Q04903; PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA; E=0.005 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.4e-08.
  
     0.610
RB11670
PMID: 2974033 best DB hits: BLAST: pir:A75265; ferric enterobactin esterase-related protein -; E=0.002 COG: DR2506; COG2382 Enterochelin esterase and related enzymes; E=2e-04.
  
     0.608
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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