STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12475Hypothetical protein-transmembrane prediction. (1086 aa)    
Predicted Functional Partners:
RB12473
Hypothetical protein.
       0.773
RB12477
Hypothetical protein-transmembrane prediction.
       0.636
RB12471
Hypothetical protein.
       0.551
RB12464
Similar to potassium channel protein; PMID: 10952301 best DB hits: BLAST: pir:C82490; probable potassium channel protein VCA0194 [imported] -; E=0.039 COG: VCA0194; COG1226 Kef-type K+ transport systems, predicted; E=0.004.
       0.530
RB12468
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00520; Ion transport protein; E=1.8e-05 PF01578; Cytochrome C assembly protein; E=0.81.
       0.530
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.