STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12497Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02895; Signal transducing histidine kin; E=0.61. (216 aa)    
Predicted Functional Partners:
fliK
Similar to flagellar hook-length control protein FliK; PMID: 1828465 best DB hits: BLAST: ddbj:BAB06171.1; (AP001515) BH2452~unknown conserved protein; E=0.067 pir:T14405; small GTP-binding protein rab-1 - turnip -----gb:; E=0.076 swissprot:P23451; FLIK_BACSU PROBABLE FLAGELLAR HOOK-LENGTH; E=0.082 COG: BH2452; COG3144 Flagellar hook-length control protein; E=0.006.
       0.790
fliJ
Similar to flagellar FliJ protein; PMID: 1904439 best DB hits: BLAST: swissprot:P20487; FLIJ_BACSU FLAGELLAR FLIJ PROTEIN (CHEMOTAXIS; E=0.012 COG: BS_fliJ; COG2882 Flagellar biosynthesis chaperone; E=0.001.
       0.782
fliI
Flagellum-specific ATP synthase; PMID: 1828465 best DB hits: BLAST: pir:D72404; flagellum-specific ATP synthase - Thermotoga maritima; E=1e-108 ddbj:BAB06174.1; (AP001515) flagellar-specific ATP synthase; E=1e-106 swissprot:P23445; FLII_BACSU FLAGELLUM-SPECIFIC ATP SYNTHASE; E=1e-103 COG: TM0218; COG1157 Flagellar biosynthesis/type III secretory pathway; E=1e-109 atpD; COG0055 F0F1-type ATP synthase beta subunit; E=2e-37 PFAM: PF00005; ABC transporter; E=0.024 PF00006; ATP synthase alpha/beta family,; E=4e-131.
       0.662
RB12501
Hypothetical protein; Best DB hits: PFAM: PF02361; Cobalt transport protein; E=0.17.
       0.657
fliG
Flagellar motor switch protein FliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=7e-08 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=6e-07 gb:AAF35852.1; AF220006_1 (AF220006) lateral flagellar motor; E=2e-06 COG: TM0220; COG1536 Flagellar motor switch protein; E=7e-09.
  
    0.654
RB12504
Hypothetical protein.
       0.642
RB12492
Hypothetical protein-transmembrane prediction.
       0.527
RB12509
Probable two-component sensor histidine kinase; PMID: 1528845 best DB hits: BLAST: pir:T30898; receptor-like histidine kinase - Rhodococcus erythropolis; E=6e-08 pir:T28694; hypothetical protein - Streptomyces coelicolor -----; E=1e-07 pir:T28655; receptor-like histidine kinase BpdS - Rhodococcus sp; E=2e-07 COG: narQ; COG0642 Sensory transduction histidine kinases; E=2e-08 PFAM: PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.9e-05.
  
    0.491
RB12506
Probable anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PMID: 9266669 best DB hits: BLAST: ddbj:BAB05255.1; (AP001512) anti-sigma F factor antagonist (stage; E=0.003 pir:S75220; hypothetical protein slr1912 - Synechocystis sp. (strain; E=0.024 COG: BH1536; COG1366 Anti-anti-sigma regulatory factor (antagonist of; E=3e-04 PFAM: PF01740; STAS domain; E=4.9e-06.
       0.482
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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