Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fliGFlagellar motor switch protein FliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=7e-08 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=6e-07 gb:AAF35852.1; AF220006_1 (AF220006) lateral flagellar motor; E=2e-06 COG: TM0220; COG1536 Flagellar motor switch protein; E=7e-09. (435 aa)    
Predicted Functional Partners:
flgE
Flagellar hook protein FlgE; PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10.
 
 
 0.998
fliM
Flagellar motor switch protein fliM; PMID: 96345631 PMID: 8755894 best DB hits: BLAST: swissprot:P74927; FLIM_TREPA FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=7e-47 swissprot:Q57511; FLIM_BORBU FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=5e-46 ddbj:BAB06165.1; (AP001515) flagellar motor switch protein; E=3e-44 COG: TP0721; COG1868 Flagellar motor switch protein; E=7e-48 PFAM: PF02154; Flagellar motor switch protein FliM; E=1.3e-68 PF01052; Surface presentation of antigens (S; E=0.19.
 
 0.998
fliN-2
Flagellar motor switch protein fliN (fragment); PMID: 2656645 PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-16 swissprot:P24073; FLIY_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIY; E=8e-16 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-15 COG: BS_fliY_2; COG1886 Flagellar motor switch/type III secretory pathway; E=6e-17 PFAM: PF01052; Surface presentation of antigens (SP; E=2.5e-25.
 
 0.994
fliN
PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-04 swissprot:P15070; FLIN_ECOLI FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 COG: TM0680a; COG1886 Flagellar motor switch/type III secretory pathway; E=2e-06 PFAM: PF01052; Surface presentation of antigens (SP; E=2.3e-07.
 
 0.990
fliF
Probable polar flagellar M-ring protein FliF; PMID: 20115548 PMID: 10648530 best DB hits: BLAST: gb:AAD15920.1; (AF069392) polar flagellar M-ring protein FliF; E=6e-04 swissprot:Q53151; FLIF_RHOSH FLAGELLAR M-RING PROTEIN -----; E=0.001 swissprot:O67241; FLIF_AQUAE FLAGELLAR M-RING PROTEIN -----; E=0.002 COG: aq_1182; COG1766 Flagellar biosynthesis/type III secretory pathway; E=2e-04 PFAM: PF01514; Secretory protein of YscJ/FliF fa; E=0.00027.
  
 
 0.989
fliI
Flagellum-specific ATP synthase; PMID: 1828465 best DB hits: BLAST: pir:D72404; flagellum-specific ATP synthase - Thermotoga maritima; E=1e-108 ddbj:BAB06174.1; (AP001515) flagellar-specific ATP synthase; E=1e-106 swissprot:P23445; FLII_BACSU FLAGELLUM-SPECIFIC ATP SYNTHASE; E=1e-103 COG: TM0218; COG1157 Flagellar biosynthesis/type III secretory pathway; E=1e-109 atpD; COG0055 F0F1-type ATP synthase beta subunit; E=2e-37 PFAM: PF00005; ABC transporter; E=0.024 PF00006; ATP synthase alpha/beta family,; E=4e-131.
 
 
 0.980
RB10924
Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.978
RB4511
Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.978
fliP
Flagellar biosynthetic protein fliP-putative tr FT ansporter of flagellar proteins; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.976
RB12501
Hypothetical protein; Best DB hits: PFAM: PF02361; Cobalt transport protein; E=0.17.
  
 
 0.974
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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