Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12564Best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=1e-09 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=6e-09 pir:D72381; dehydrogenase - Thermotoga maritima (strain MSB8); E=3e-07 COG: BS_yrbE; COG0673 Predicted dehydrogenases and related proteins; E=5e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.4e-16. (430 aa)    
Predicted Functional Partners:
RB1939
Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14.
  
     0.688
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
     0.684
RB5140
Probable NADH-dependent dehydrogenase; PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-09.
  
     0.681
strI
PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.4e-05.
  
     0.663
RB1063
Oxidoreductase; PMID: 10086842 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-24 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=8e-21 gb:AAD39613.1; AC007454_12 (AC007454) Similar to gb D14605 AX110P; E=2e-20 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=8e-22 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=4.8e-38.
  
     0.628
RB3770
Probable NADH-dependent dyhydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-19 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-17 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=9e-15 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=3e-20 PFAM: PF01408; Oxidoreductase family, NAD-bi; E=1.5e-26.
  
     0.618
RB7193
Putative oxidoreductase; PMID: 9477341 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-45 pir:T14319; protein AX110P - carrot ----- ddbj: BAA03455.1; E=2e-35 embl:CAB55380.1; (AL117263) putative oxidoreductase [Leishmania; E=6e-35 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=2e-26 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=0.0035 PF02894; Oxidoreductase family, C-termi; E=0.11.
  
     0.608
RB9982
3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein; Best DB hits: BLAST: embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=1e-11 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=3e-10 pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=2e-09 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=3e-11 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=1.1e-09 PF02894; Oxidoreductase family, C-termi; E=0.0018.
  
     0.588
RB5727
Probable oxidoreductase; Best DB hits: BLAST: gb:AAD41367.1; AF151698_4 (AF151698) putative oxidoreductase; E=9e-09 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=1e-08 pir:T38428; hypothetical oxidoreductase - fission yeast; E=5e-08 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=9.2e-22.
  
     0.583
RB3635
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=4e-06 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-05 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=2e-04.
  
     0.562
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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