Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12604Similar to hexosyltransferase; Best DB hits: BLAST: gb:AAF14309.1; (U45308) SqdX [Synechococcus sp. PCC 7942]; E=0.009 pir:T34839; probable hexosyltransferase (EC 2.4.1.-) SC2G5.06; E=0.031 pir:T35514; probable glycosyl transferase - Streptomyces coelicolor; E=0.072. (468 aa)    
Predicted Functional Partners:
wecG
PMID: 8905231 best DB hits: BLAST: pir:S74482; UDP-N-acetyl-D-mannosaminuronic acid transferase rffM-1; E=6e-44 pir:C82265; UDP-N-acetyl-D-mannosamine transferase VC0927 [imported]; E=2e-20 gb:AAC78668.1; (AF094575) putative N-acetyl-mannosamine; E=1e-15 COG: slr1118; COG1922 Teichoic acid biosynthesis proteins; E=5e-45; Belongs to the glycosyltransferase 26 family.
 
   0.805
RB12606
Cps2E; PMID: 99184998 best DB hits: BLAST: gb:AAD24451.1; AF118389_8 (AF118389) Cps2E [Streptococcus suis]; E=4e-34 pir:S75572; glucosyltransferase - Synechocystis sp. (strain PCC; E=1e-33 pir:JC5726; phosphate-prenyl glycosyl-1-phosphate transferase (EC; E=9e-33 COG: slr0820; COG2148 Sugar transferases involved in lipopolysaccharide; E=9e-35 PFAM: PF02397; Bacterial sugar transferase; E=3.6e-52.
  
    0.795
RB12602
Similar to chitooligosaccharide deacetylase; Best DB hits: BLAST: pir:T35588; probable secreted protein - Streptomyces coelicolor; E=0.24 ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.63 PFAM: PF01522; Polysaccharide deacetylase; E=0.00027.
       0.773
RB12608
Uncharacterized protein; PMID: 10984043 best DB hits: BLAST: pir:D83367; hypothetical protein PA2235 [imported] - Pseudomonas; E=0.002 swissprot:P33698; EXOP_RHIME SUCCINOGLYCAN BIOSYNTHESIS TRANSPORT; E=0.010 pir:S37031; probable succinoglycan transport protein exoP -; E=0.021 COG: PA2235; COG3206 Uncharacterized protein involved in; E=2e-04.
 
    0.658
RB2797
Similar to cytochrome c-554 [precursor]; PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.003 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=0.003.
  
     0.606
RB2484
Putative glycosyltransferase; PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1; AF076290_7 (AF076290) putative glycosyltransferase; E=5e-17 gb:AAB84956.1; (AE000829) LPS biosynthesis RfbU related protein; E=3e-05 pir:H69158; LPS biosynthesis RfbU related protein - Methanobacterium; E=3e-05 COG: MTH450; COG0438 Predicted glycosyltransferases; E=3e-06 PFAM: PF00534; Glycosyl transferases group 1; E=5.8e-18.
  
     0.566
rfbE
CDP-tyvelose epimerase; PMID: 96125720 PMID: 97158136 PMID: 2793833 best DB hits: BLAST: gb:AAB48319.1; (U29691) CDP-tyvelose epimerase [Yersinia; E=2e-29 swissprot:P14169; RFBE_SALTI CDP-TYVELOSE-2-EPIMERASE -----; E=3e-27 pir:B33604; rfbE protein - Salmonella sp; E=7e-26 COG: HI0873; COG1088 dTDP-D-glucose 4,6-dehydratase; E=5e-19 BH3649; COG0451 Nucleoside-diphosphate-sugar epimerases; E=1e-14 PH0414; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-14 PFAM: PF01370; NAD dependent epimerase/dehydratase; E=0.0012.
  
    0.502
RB7263
Conserved hypothetical protein; PMID: 98196666 best DB hits: BLAST: pir:D70370; hypothetical protein aq_808 - Aquifex aeolicus -----; E=1e-05 PFAM: PF00430; ATP synthase B/B' CF(0); E=0.87.
  
     0.499
RB12610
Hypothetical protein.
       0.448
RB12611
Probable methyltransferase; Best DB hits: BLAST: pir:S75267; hypothetical protein slr1039 - Synechocystis sp. (strain; E=5e-07 swissprot:P46326; YXBB_BACSU HYPOTHETICAL 28.2 KDA PROTEIN IN; E=7e-06 gb:AAG29793.1; AF235050_16 (AF235050) putative methyltransferase; E=0.005 COG: slr1039; COG0500 SAM-dependent methyltransferases; E=5e-08 VC1257; COG2227; E=9e-04 BH2331; COG0500 SAM-dependent methyltransferases; E=0.001.
       0.448
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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