STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12631Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00327; Ribosomal protein L30p/L7e; E=0.19. (527 aa)    
Predicted Functional Partners:
RB12630
Hypothetical protein-signal peptide prediction.
 
     0.808
RB12633
PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1; AF168362_1 (AF168362) protein associating with; E=3e-05 gb:AAF56739.2; (AE003762) CG12879 gene product [Drosophila; E=4e-05 pir:T15138; hypothetical protein T28F2.4 - Caenorhabditis elegans; E=5e-04 COG: NMB1786; COG2850 Uncharacterized ACR; E=0.007 PFAM: PF02373; jmjC domain; E=0.018.
       0.773
RB12629
Hypothetical protein.
       0.572
RB10067
Hypothetical protein-putative transmembrane protein.
  
     0.546
RB11978
Conserved hypothetical protein-putative hydrolase; PMID: 10984043 best DB hits: BLAST: pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=3e-11 swissprot:Q01578; GNL_ZYMMO GLUCONOLACTONASE PRECURSOR; E=2e-07 swissprot:P10478; XYNZ_CLOTM ENDO-1,4-BETA-XYLANASE Z PRECURSOR; E=4e-06 COG: PA2451; COG2382 Enterochelin esterase and related enzymes; E=3e-12 BS_ybbA; COG2819 Predicted hydrolase of the alpha/beta superfamily; E=0.001 fes; COG2382 Enterochelin esterase and related enzymes; E=0.002.
 
    0.530
RB4014
Probable acetyl xylan esterase; PMID: 10846217 best DB hits: BLAST: embl:CAB55348.1; (AJ238716) acetyl xylan esterase [Ruminococcus; E=5e-07.
  
     0.526
RB874
Hypothetical protein; PMID: 11481431.
  
     0.480
RB3171
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:D83643; hypothetical protein PA0015 [imported] - Pseudomonas; E=0.011 pir:F70422; hypothetical protein aq_1409 - Aquifex aeolicus -----; E=0.065 gb:AAF06042.1; AC009360_7 (AC009360) F16G16.8 [Arabidopsis; E=0.68 COG: PA0015; COG0457 TPR-repeat-containing proteins; E=0.001.
  
     0.470
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
  
 0.461
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
  
 0.452
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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