Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12633PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1; AF168362_1 (AF168362) protein associating with; E=3e-05 gb:AAF56739.2; (AE003762) CG12879 gene product [Drosophila; E=4e-05 pir:T15138; hypothetical protein T28F2.4 - Caenorhabditis elegans; E=5e-04 COG: NMB1786; COG2850 Uncharacterized ACR; E=0.007 PFAM: PF02373; jmjC domain; E=0.018. (316 aa)    
Predicted Functional Partners:
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.777
RB12630
Hypothetical protein-signal peptide prediction.
       0.773
RB12631
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00327; Ribosomal protein L30p/L7e; E=0.19.
       0.773
RB11529
Probable beta-1,4 N-acetylgalactosaminyltransferase; PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1; (M83651) beta-1,4; E=6e-07 ddbj:BAA04632.1; (D17809) beta-4N-acetylgalactosaminyltransferase; E=2e-06 gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 COG: BS_yveT; COG0463 Glycosyltransferases involved in cell wall; E=0.003 PFAM: PF00535; Glycosyl transferase; E=5.2e-08.
  
     0.760
RB5263
Best DB hits: BLAST: ref:XP_010773.1; hypothetical protein FLJ11151 [Homo sapiens]; E=2e-53 ddbj:BAA92034.1; (AK002013) unnamed protein product [Homo; E=7e-53 ddbj:BAB14194.1; (AK022710) unnamed protein product [Homo; E=2e-52.
  
     0.687
RB11527
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=6.9e-07.
  
     0.661
RB11319
Probable telomerase protein-1; Best DB hits: BLAST: gb:AAC53043.1; (U86137) telomerase protein-1 [Mus musculus]; E=2e-08 gb:AAB51690.1; (U89282) telomerase protein component 1 [Rattus; E=3e-06 gb:AAC51107.1; (U86136) telomerase-associated protein TP-1 [Homo; E=6e-06.
  
     0.609
RB7592
Probable ferredoxin; Best DB hits: BLAST: embl:CAA09913.1; (AJ012090) ferredoxin [Xanthobacter sp. Py2]; E=7e-06 pir:B83424; assimilatory nitrite reductase small subunit PA1780; E=8e-06 gb:AAD46364.1; AF161183_4 (AF161183) PrnD [Burkholderia cepacia]; E=3e-04 COG: PA1780; COG2146 Ferredoxin subunits of nitrite reductase and; E=8e-07 PFAM: PF00355; Rieske [2Fe-2S] domain; E=1.7e-15.
  
     0.595
RB11356
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=1.6e-06.
  
     0.591
smuG1
Single-strand selective monofunctional uracil DNA glycosylase; PMID: 10074426 best DB hits: BLAST: ddbj:BAA91571.1; (AK001235) unnamed protein product [Homo; E=3e-51 gb:AAD17300.1; (AF125181) single-strand selective monofunctional; E=1e-50 gb:AAF55400.1; (AE003716) CG5285 gene product [Drosophila; E=5e-33.
  
     0.573
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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