STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
accProbable acetyl-CoA carboxylase; PMID: 7592499 best DB hits: BLAST: pir:A57710; acetyl-CoA carboxylase (EC 6.4.1.2) - wheat -----; E=2e-05 prf:2208491A; Ac-CoA carboxylase [Triticum aestivum]; E=2e-05 pir:T09538; acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa -----; E=3e-05 COG: PA0494; COG0439 Biotin carboxylase; E=2e-04 carB; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.001 DR0668; COG0458 Carbamoylphosphate synthase large subunit (split; E=0.002 PFAM: PF02786; Carbamoyl-phosphate synthase L ch; E=0.49. (428 aa)    
Predicted Functional Partners:
apbA
Probable 2-dehydropantoate 2-reductase; PMID: 9488683 best DB hits: BLAST: swissprot:O50098; APBA_PYRHO PROBABLE 2-DEHYDROPANTOATE; E=5e-09 embl:CAB04765.1; (Z82004) ORF12(1) [Rhodococcus erythropolis]; E=2e-08 pir:T35004; probable oxidoreductase - Streptomyces coelicolor; E=5e-06 COG: PH1390; COG1893 Ketopantoate reductase; E=5e-10 PFAM: PF02558; Ketopantoate reductase PanE/ApbA; E=0.00046.
       0.773
RB12639
Hypothetical protein.
       0.773
RB12640
Probable auxin-responsive-like protein; PMID: 11538549 best DB hits: BLAST: gb:AAD32141.1; AF123503_1 (AF123503) Nt-gh3 deduced protein; E=6e-16 pir:T00515; hypothetical protein T20D16.20 - Arabidopsis thaliana; E=1e-15 ddbj:BAA97524.1; (AB026634) auxin-responsive-like protein; E=1e-14.
       0.640
RB12634
Hypothetical protein-signal peptide prediction.
       0.519
accC
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
  0.499
RB12643
Hypothetical protein.
       0.467
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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