STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12679Conserved hypothetical protein; Best DB hits: BLAST: embl:CAC08530.1; (AJ249578) hypothetical protein [Rhodothermus; E=1e-39 pir:A70488; hypothetical protein aq_2189 - Aquifex aeolicus -----; E=1e-18 ddbj:BAA06975.1; (D32217) ORF3 [Desulfovibrio vulgaris]; E=1e-09 COG: aq_2189; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in; E=1e-19. (339 aa)    
Predicted Functional Partners:
ctaC
Cytochrome oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.968
RB12676
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01473; Putative cell wall binding repea; E=0.31 PF02326; YMF19 hypothetical plant mitocho; E=0.59.
 
 
 0.900
ctaD
Cytochrome oxidase subunit I; PMID: 20576172 best DB hits: BLAST: embl:CAC08532.1; (AJ249578) cytochrome oxidase subunit I; E=1e-146 ddbj:BAA06976.1; (D32217) cytochrome c oxidase-like protein; E=1e-122 swissprot:Q06473; COX1_SYNY3 CYTOCHROME C OXIDASE POLYPEPTIDE I; E=3e-99 COG: slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=1e-100 RP405; COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit; E=3e-93 BS_ctaD; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=4e-91 PFAM: PF00115; Cytochrome C and Quinol oxidase pol; E=8.3e-185; Belongs to the heme-copper [...]
 
  
 0.892
RB12673
Hypothetical protein-transmembrane prediction.
 
    0.879
ctaE
Cytochrome oxidase subunit III; PMID: 20576172 best DB hits: BLAST: embl:CAC08533.1; (AJ249578) cytochrome oxidase subunit III; E=3e-27 embl:CAA98149.1; (Z73914) ORF175 protein [Pseudomonas stutzeri]; E=2e-08 gb:AAG34379.1; AF197466_2 (AF197466) NirO [Pseudomonas; E=3e-08 COG: APE0793_2; COG1845 Heme/copper-type cytochrome/quinol oxidase,; E=5e-08 slr2083; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit; E=8e-08 VNG0662G; COG1845 Heme/copper-type cytochrome/quinol oxidase,; E=2e-06.
 
  
 0.875
RB12666
Best DB hits: BLAST: gb:AAB91057.1; (AE001094) molybdopterin oxidoreductase, iron-sulfur; E=5e-29 gb:AAG19285.1; (AE005024) molybdopterin oxidoreductase; HmoA; E=3e-26 gb:AAB90738.1; (AE001069) molybdopterin oxidoreductase, iron-sulfur; E=1e-24 COG: AF0175; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=5e-30 PFAM: PF01568; Molydopterin dinucleotide bin; E=0.018 PF00037; 4Fe-4S binding domain; E=0.15.
 
   
 0.869
RB12669
Best DB hits: BLAST: gb:AAB91058.1; (AE001094) molybdopterin oxidoreductase, membrane; E=5e-06 pir:T50876; hypothetical membrane protein [imported] - Rubrivivax; E=7e-06 gb:AAG19286.1; (AE005024) molybdopterin oxidoreductase; Moz; E=0.019.
 
   
 0.858
RB12664
Hypothetical protein-transmembrane prediction.
 
  
 0.857
ctaF
Similar to cytochrome oxidase subunit IV; PMID: 7678007 best DB hits: BLAST: embl:CAC08534.1; (AJ249578) cytochrome oxidase subunit IV; E=0.025.
 
   
 0.844
RB4417
Cytochrome-c oxidase chain II/c precursor; PMID: 89231697 PMID: 91161592 best DB hits: BLAST: pir:A23711; cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -; E=3e-42 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=5e-38 ddbj:BAB06334.1; (AP001516) cytochrome caa3 oxidase (subunit II); E=2e-35 COG: BH2615_1; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=2e-21 XF1390; COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit; E=1e-14 slr1136; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=3e-14 PFAM: PF00116; Cytochrome C oxidase subunit II, [...]
 
 
 0.809
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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