STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12697Conserved hypothetical protein-putative adhesin; Best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.065 ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.081 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus; E=0.26 PFAM: PF00404; Dockerin type I repeat; E=0.01. (1703 aa)    
Predicted Functional Partners:
RB12696
Hypothetical protein.
       0.601
RB11415
Conserved hypothetical protein; PMID: 4515613 PMID: 354508 PMID: 6221115 best DB hits: BLAST: gb:AAA96561.1; (J02459) ea59 (525) [bacteriophage lambda]; E=5e-05 pir:S49559; phage Hau3 resistance protein - Streptomyces lividans; E=2e-04 gb:AAK02366.1; (AE006063) unknown [Pasteurella multocida]; E=0.014 PFAM: PF02463; SMC domain N terminal domain; E=0.039.
  
     0.582
RB6207
Conserved hypothetical protein; PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=2e-05 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.064 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=0.064 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=2e-06 PFAM: PF01011; PQQ enzyme repeat; E=0.47 PF02316; Mu DNA-binding domain; E=0.84.
  
     0.473
RB12694
Probable serine/threonine kinase; PMID: 7768349 best DB hits: BLAST: pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=2e-12 gb:AAG48248.1; AF282407_1 (AF282407) p70 ribosomal protein S6; E=2e-12 gb:AAF22219.1; AF141378_1 (AF141378) protein kinase PK4 [Zea mays]; E=2e-12 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=2e-12 PFAM: PF01636; Aminoglycoside phosphotransferas; E=0.093 PF00069; Protein kinase domain; E=6.3e-17 PF00285; Citrate synthase; E=0.22.
  
    0.460
RB9330
Probable fibrinogen-binding protein homolog-putative involved in cell-cell interaction; PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=9e-46 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=1e-37 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=6e-24.
 
     0.451
RB9053
Best DB hits: BLAST: pir:F69009; probable membrane protein MTH1074 - Methanobacterium; E=1e-19 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=0.008 pir:B75556; hypothetical protein - Deinococcus radiodurans (strain R1); E=0.059 PFAM: PF01345; Domain of unknown function DUF11; E=0.14.
  
     0.441
RB5272
Conserved hypothetical protein; PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.006 gb:AAG09249.1; AF176640_2 (AF176640) alcohol dehydrogenase; E=0.20 gb:AAD56237.2; AF184915_1 (AF184915) methanol dehydrogenase large; E=0.22 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.022.
  
     0.435
RB4715
Best DB hits: BLAST: pir:T35548; hypothetical protein SC6G3.04 - Streptomyces coelicolor; E=1e-145 embl:CAB61596.1; (AL133210) hypothetical protein SCG11A.15; E=5e-93 swissprot:P33352; YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN; E=5e-27.
  
     0.418
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.