STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12747Hypothetical protein. (53 aa)    
Predicted Functional Partners:
mutM
Probable formamidopyrimidine-DNA glycosylase; PMID: 7704272 best DB hits: BLAST: swissprot:O53191; YO64_MYCTU PUTATIVE DNA GLYCOSYLASE RV2464C; E=6e-55 embl:CAC10002.1; (AL442143) putative DNA repair hydrolase; E=6e-46 swissprot:P95744; FPG_SYNEN FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; E=1e-14 COG: Rv2464c; COG0266 Formamidopyrimidine-DNA glycosylase; E=2e-55 PFAM: PF01149; Formamidopyrimidine-DNA glycos; E=4.3e-40.
       0.671
purM
Phosphoribosylformylglycinamidine cyclo-ligase; PMID: 3015935 PMID: 3530323 best DB hits: BLAST: pir:S75786; phosphoribosylformylglycinamidine cyclo-ligase (EC; E=3e-82 ddbj:BAB04350.1; (AP001509) phosphoribosylaminoimidazole; E=7e-82 swissprot:P12043; PUR5_BACSU PHOSPHORIBOSYLFORMYLGLYCINAMIDINE; E=8e-77 COG: slr0838; COG0150 Phosphoribosylaminoimidazol (AIR) synthetase; E=3e-83 PFAM: PF00586; AIR synthase related protein, N-term; E=2.2e-55 PF02769; AIR synthase related protein, C-term; E=9.4e-36.
       0.410
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.