Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB12770Hypothetical protein. (166 aa)    
Predicted Functional Partners:
pilT-2
Twitching mobility protein PilT; PMID: 1676385 best DB hits: BLAST: pir:C70365; twitching motility protein PilT - Aquifex aeolicus; E=7e-81 pir:B75333; twitching mobility protein - Deinococcus radiodurans; E=9e-81 embl:CAB56295.1; (AJ249385) twitching motility protein; E=2e-77 COG: aq_745; COG2805 Predicted ATPases involved in pili biogenesis, PilT; E=6e-82 TM0837; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=4e-27 PFAM: PF00437; Bacterial type II secretion syst; E=0.18 PF02283; Cobinamide kinase / cobinamide p; E=0.86 PF00437; Bacterial type II secretion syst; E=1.5e-51.
       0.568
pilB-2
Type IV fimbrial assembly protein PilB; PMID: 1971619 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=1e-105 pir:B70469; type IV pilus assembly protein TapB - Aquifex aeolicus; E=1e-104 swissprot:P45792; TAPB_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPB; E=1e-100 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-107 PFAM: PF00005; ABC transporter; E=0.27 PF00448; SRP54-type protein, GTPase doma; E=0.01 PF00004; ATPase family associated with v; E=0.0029.
       0.477
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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