Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12790Hypothetical protein; Best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.038. (2396 aa)    
Predicted Functional Partners:
RB12785
Hypothetical protein-signal peptide and transmembrane prediction.
       0.807
RB12795
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.53.
     
 0.805
RB12786
Hypothetical protein; Best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.41 PF00114; Pilin (bacterial filament); E=0.025.
       0.777
RB12787
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB12783
Hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.62.
     
 0.685
RB12797
Hypothetical protein.
       0.657
pilC
Type IV fimbrial assembly protein PilC; PMID: 1971619 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=7e-48 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=7e-44 pir:C83078; still frameshift type 4 fimbrial biogenesis protein PilC; E=3e-41 COG: DR1863; COG1459 General secretory pathway protein F; E=6e-49 PFAM: PF00482; Bacterial type II secretion system p; E=1.2e-68.
     
 0.452
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.