Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12815Hypothetical protein. (43 aa)    
Predicted Functional Partners:
RB12814
Hypothetical protein.
       0.773
guaA
Probable glutamine amidotransferase; PMID: 3298209 best DB hits: BLAST: pir:E70885; hypothetical protein Rv2859c - Mycobacterium; E=2e-24 pir:C83609; probable glutamine amidotransferase PA0297 [imported] -; E=1e-19 pir:T36850; hypothetical protein SCI35.37 - Streptomyces coelicolor; E=1e-17 COG: Rv2859c; COG2071 Predicted glutamine amidotransferases; E=2e-25 PFAM: PF00117; Glutamine amidotransferase class-I; E=8.7e-05.
       0.559
RB12811
Hypothetical protein.
       0.474
fabH
3-oxoacyl-[ACP] synthase III; PMID: 1551888 best DB hits: BLAST: pir:H82615; 3-oxoacyl-[ACP] synthase III XF1970 [imported] - Xylella; E=6e-37 embl:CAB82875.1; (AJ276673) putative condensing enzyme; E=5e-12 pir:T34914; 3-oxoacyl-[acyl-carrier-protein] synthase - Streptomyces; E=2e-10 COG: XF1970; COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; E=6e-38.
       0.474
RB12813
Hypothetical protein.
       0.474
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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