Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12831PMID: 8813763 best DB hits: BLAST: pir:G69148; dolichyl-phosphate mannose synthase related protein 1 -; E=2e-19 pir:D69148; dolichyl-phosphate mannose synthase related protein 2 -; E=5e-18 embl:CAB61668.1; (AL133213) putative glycosyl transferase; E=7e-18 COG: MTH377; COG0463 Glycosyltransferases involved in cell wall; E=2e-20 PFAM: PF00535; Glycosyl transferase; E=1.8e-23. (264 aa)    
Predicted Functional Partners:
RB12830
Hypothetical protein.
       0.705
RB2990
Conserved hypothetical protein-putative glycosyltransferase; PMID: 9537320 best DB hits: BLAST: pir:B70393; hypothetical protein aq_1080 - Aquifex aeolicus -----; E=2e-11 pir:E83367; hypothetical protein PA2236 [imported] - Pseudomonas; E=8e-09 pir:S77553; probable hexosyltransferase (EC 2.4.1.-) sll1971; E=4e-07 COG: aq_1080; COG0438 Predicted glycosyltransferases; E=2e-12 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-15.
   
  
 0.628
RB2503
Probable flippase; PMID: 10222209 best DB hits: BLAST: ddbj:BAA77727.1; (AB008676) flippase [Escherichia coli]; E=3e-05 gb:AAG57097.1; AE005429_8 (AE005429) O antigen flippase Wzx; E=3e-05 embl:CAA64437.1; (X94981) aceE [Acetobacter xylinus]; E=0.17.
   
  
 0.627
oppB
Oligopeptide transport system permease protein OppB; PMID: 1738314 PMID: 2187863 best DB hits: BLAST: ddbj:BAA14776.1; (D90763) Oligopeptide transport system permease; E=8e-56 swissprot:P31132; OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-55 pir:B38447; oligopeptide permease oppB homolog - Bacillus subtilis; E=2e-55 COG: oppB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-56 PFAM: PF00528; Binding-protein-dependent transpor; E=0.00032.
      
 0.618
RB2988
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=7e-25 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=4e-17 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=6e-10 COG: TM1852; COG2152 Uncharacterized ACR; E=7e-26.
      
 0.618
RB2991
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:E72203; conserved hypothetical protein - Thermotoga maritima; E=2e-36 pir:B72278; conserved hypothetical protein - Thermotoga maritima; E=9e-34 gb:AAG45396.1; AF307053_11 (AF307053) unknown [Thermococcus; E=5e-18 COG: TM1852; COG2152 Uncharacterized ACR; E=2e-37.
      
 0.618
RB4061
Probable type 4 prepilin-like proteins leader peptide processing enzyme; PMID: 8817497 PMID: 8439290 best DB hits: BLAST: pir:E82546; pre-pilin leader peptidase XF2537 [imported] - Xylella; E=5e-06 swissprot:P36642; LEP4_PSEPU TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=1e-05 gb:AAC17878.1; (AF062531) signal peptidase [Pseudomonas putida; E=1e-04 COG: XF2537; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=5e-07 PFAM: PF01478; Type III leader peptidase famil; E=3.7e-05.
      
 0.618
RB5478
Putative two-component system response regulator; PMID: 7699720 best DB hits: BLAST: embl:CAB88489.1; (AL353816) putative two-component systen; E=1e-15 gb:AAB06615.1; (U53173) MviA [Salmonella typhimurium]; E=2e-14 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=1e-13 COG: slr0115; COG0745 Response regulators consisting of a CheY-like; E=1e-13 XF1952_3; COG0784 CheY-like receiver domains; E=3e-13 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=3e-12 PFAM: PF00072; Response regulator receiver doma; E=2.4e-27.
      
 0.618
gltD
NADH-glutamate synthase small chain; PMID: 2643092 PMID: 3326786 best DB hits: BLAST: ddbj:BAA12742.1; (D85230) small subunit of NADH-dependent; E=1e-163 pir:T49818; probable glutamate synthase (NADPH) [imported] -; E=1e-162 pir:S74625; NADH-glutamate synthase small chain gltD - Synechocystis; E=1e-161 COG: sll1027; COG0493 NADPH-dependent glutamate synthase beta chain and; E=1e-162 PFAM: PF01494; FAD binding domain; E=0.013 PF02254; KTN NAD-binding domain; E=0.036 PF00984; UDP-glucose/GDP-mannose dehydr; E=0.28.
      
 0.618
RB8905
Best DB hits: BLAST: embl:CAC15463.1; (AJ294477) putative polyprenol phosphate; E=6e-18 pir:B70945; hypothetical protein Rv2051c - Mycobacterium; E=2e-16 embl:CAB11300.1; (Z98604) hypothetical protein MLCB2052.02; E=2e-14 COG: Rv2051c_2; COG0463 Glycosyltransferases involved in cell wall; E=6e-17 PFAM: PF00535; Glycosyl transferase; E=4.6e-17.
  
     0.608
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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