Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB12844Hypothetical protein. (342 aa)    
Predicted Functional Partners:
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
    0.668
RB5581
Best DB hits: BLAST: pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=8e-05 gb:AAD38234.1; (U17224) CarF [Pectobacterium carotovorum]; E=0.002 pir:H81703; conserved hypothetical protein TC0422 [imported] -; E=0.016 COG: VCA1077_2; COG1262 Uncharacterized BCR; E=8e-06.
  
     0.651
strI
PMID: 1654502 best DB hits: BLAST: swissprot:P09400; STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=5e-06 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=0.014 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=4e-07 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.4e-05.
  
    0.649
RB1939
Probable oxidoreductase; PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=6e-06 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=1e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=2e-08 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=5e-14.
  
    0.644
RB774
PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=7e-23 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=5e-21 pir:T36423; probable large, multifunctional secreted protein -; E=0.048.
  
     0.579
RB1109
Putative multi-domain protein; PMID: 8843436 best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=2e-24 embl:CAB45032.1; (AL078635) putative large multi-functional; E=3e-24 pir:T36423; probable large, multifunctional secreted protein -; E=0.003.
  
     0.567
RB10503
Probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase; Best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=7e-09 ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=2e-07 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-06 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=7e-10 PFAM: PF01118; Semialdehyde dehydrogenase, NA; E=0.37 PF01408; Oxidoreductase family, NAD-bin; E=6e-09 PF02894; Oxidoreductase family, C-termi; E=0.52.
  
    0.549
RB569
Conserved hypothetical protein-putative secreted protein; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=2e-08 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 embl:CAB45032.1; (AL078635) putative large multi-functional; E=8e-05.
  
     0.546
RB12843
Hypothetical protein.
       0.545
RB3330
Probable dehydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-06 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=3e-05 swissprot:Q44258; CBAC_ALCSB 1-CARBOXY-3-CHLORO-3,4-DIHYDROXYCYCLO; E=6e-05 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-07 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=4.6e-08.
  
    0.535
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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