STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12866Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: swissprot:P73079; YK42_SYNY3 HYPOTHETICAL 31.9 KD PROTEIN SLR2042; E=5e-19 pir:B83141; conserved hypothetical protein PA4030 [imported] -; E=3e-13 pir:C64962; probable membrane protein b1976 - Escherichia coli; E=5e-08 COG: slr2042; COG3228 Uncharacterized BCR; E=5e-20 TP0379; COG0653 Preprotein translocase subunit SecA (ATPase, RNA; E=0.001 yecA; COG3318 Predicted metal-binding protein related to the; E=0.002 PFAM: PF02810; SEC-C motif; E=5.3e-08; Belongs to the MtfA family. (373 aa)    
Predicted Functional Partners:
aspC
Aspartate aminotransferase; PMID: 6378205 best DB hits: BLAST: swissprot:P44425; AAT_HAEIN ASPARTATE AMINOTRANSFERASE; E=1e-114 swissprot:P00509; AAT_ECOLI ASPARTATE AMINOTRANSFERASE; E=1e-112 pdb:1ART; Aspartate Aminotransferase (E.C.2.6.1.1) Complexed; E=1e-112 COG: HI1617; COG1448 Aspartate/aromatic aminotransferase; E=1e-115 PH1371; COG0436 PLP-dependent aminotransferases; E=1e-04 PFAM: PF00155; Aminotransferase class-I; E=1e-147.
       0.562
RB12870
Hypothetical protein.
       0.500
RB12873
Hypothetical protein.
       0.500
RB12874
Hypothetical protein.
       0.500
RB6669
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:D83181; hypothetical protein PA3728 [imported] - Pseudomonas; E=0.0 pir:T36105; probable large glycinealanine rich protein - Streptomyces; E=1e-165 pir:D75436; ATP-dependent Clp proteinase, ATP-binding subunit ClpC -; E=0.19 PFAM: PF00004; ATPase family associated with; E=0.00026.
  
     0.477
RB7099
Conserved hypothetical protein-containing vWFA domain; PMID: 9278503 best DB hits: BLAST: swissprot:P76481; YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN; E=3e-99 embl:CAB75310.1; (AL139164) putative lipoprotein [Streptomyces; E=4e-54 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=8e-10 COG: yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=1e-100 sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=7e-11 PFAM: PF00092; von Willebrand factor type A domain; E=4.9e-07.
 
     0.460
RB6668
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: pir:T36106; hypothetical protein SCE15.03c - Streptomyces coelicolor; E=3e-87 pir:A83179; conserved hypothetical protein PA3729 [imported] -; E=4e-73 gb:AAG58185.1; AE005534_7 (AE005534) putative membrane protein; E=2e-28 COG: PA3729; COG2268 Uncharacterized BCR; E=4e-74.
  
     0.443
oppC
PMID: 1738314 PMID: 1901616 best DB hits: BLAST: pir:D82242; oligopeptide ABC transporter, permease protein VC1093; E=4e-50 swissprot:P45053; OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-46 pir:D70141; oligopeptide ABC transporter, permease protein (oppC-1); E=5e-46 COG: VC1093; COG1173 ABC-type dipeptide/oligopeptide/nickel transport; E=4e-51 PFAM: PF00528; Binding-protein-dependent transpor; E=9.1e-10.
       0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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