Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RB12877Hypothetical protein. (93 aa)    
Predicted Functional Partners:
RB12879
Hypothetical protein.
       0.773
RB12881
PMID: 7699720 best DB hits: BLAST: gb:AAD20723.1; (AF051157) response regulator homolog OmpR [Vibrio; E=5e-09 pir:C82042; transcription regulator OmpR VC2714 [imported] - Vibrio; E=6e-09 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=9e-09 COG: VC2714; COG0745 Response regulators consisting of a CheY-like; E=6e-10 ompR; COG0745 Response regulators consisting of a CheY-like receiver; E=3e-09 slr0322_2; COG0784 CheY-like receiver domains; E=7e-09 PFAM: PF00072; Response regulator receiver doma; E=1.7e-20.
       0.615
RB12875
Hypothetical protein.
       0.576
RB12882
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00515; TPR Domain; E=0.058.
       0.443
rluD
Ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.443
RB12886
Conserved hypothetical protein-putative integral membrane protein; PMID: 10567266 best DB hits: BLAST: gb:AAF12561.1; AE001826_30 (AE001826) conserved hypothetical; E=4e-13 swissprot:P76262; YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN; E=2e-12 gb:AAG56805.1; AE005404_8 (AE005404) putative transport protein; E=2e-12 COG: DRB0131; COG0861 Membrane protein TerC, possibly involved in; E=4e-14 ygdQ; COG0861 Membrane protein TerC, possibly involved in tellurium; E=7e-10 yegH_1; COG0861 Membrane protein TerC, possibly involved in; E=5e-09.
       0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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