Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12892Hypothetical protein. (129 aa)    
Predicted Functional Partners:
RB12895
Hypothetical protein.
      
0.773
RB12891
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC14880.1; (AF060080) hypothetical protein [Chlorobium; E=1e-06 pir:C75001; hypothetical protein PAB1341 - Pyrococcus abyssi (strain; E=3e-06 embl:CAB66204.1; (AL136502) hypothetical protein SCF43.15c; E=5e-05 COG: PAB1341; COG2120 Uncharacterized proteins, LmbE homologs; E=3e-07 PFAM: PF02585; Uncharacterized LmbE-like protein, C; E=1.1e-05.
       0.601
RB12890
Hypothetical protein.
       0.593
RB12882
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00515; TPR Domain; E=0.058.
       0.436
rluD
Ribosomal large subunit pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.436
RB12886
Conserved hypothetical protein-putative integral membrane protein; PMID: 10567266 best DB hits: BLAST: gb:AAF12561.1; AE001826_30 (AE001826) conserved hypothetical; E=4e-13 swissprot:P76262; YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN; E=2e-12 gb:AAG56805.1; AE005404_8 (AE005404) putative transport protein; E=2e-12 COG: DRB0131; COG0861 Membrane protein TerC, possibly involved in; E=4e-14 ygdQ; COG0861 Membrane protein TerC, possibly involved in tellurium; E=7e-10 yegH_1; COG0861 Membrane protein TerC, possibly involved in; E=5e-09.
       0.436
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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