STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12897Hypothetical protein-signal peptide prediction. (303 aa)    
Predicted Functional Partners:
RB13131
Similar to cysteine proteinase; PMID: 9389475 best DB hits: BLAST: gb:AAB89309.1; (AE000969) cysteine proteinase, putative; E=0.30 PFAM: PF01839; FG-GAP repeat; E=0.31.
  
     0.739
RB609
Conserved hypothetical protein-putative xylan esterase; PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=2e-08 gb:AAB68821.1; (AF001926) xylan esterase 1 [Thermoanaerobacterium; E=0.001 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.003 COG: XF1745; COG1073 Hydrolases of the alpha/beta superfamily; E=3e-04 PFAM: PF01738; Dienelactone hydrolase family; E=0.53.
 
     0.731
RB5763
Hypothetical protein-signal peptide prediction; PMID: 11481431 best DB hits: BLAST: embl:CAC18704.1; (AL451182) hypothetical protein [Streptomyces; E=0.12.
  
     0.701
RB11994
Conserved hypothetical protein-putative secreted protein; PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=0.20.
  
     0.667
RB8866
Best DB hits: BLAST: pir:T44513; hypothetical protein 5P [imported] - Plesiomonas; E=3e-21 gb:AAG17422.1; AF285971_6 (AF285971) WbgV [Shigella sonnei]; E=4e-21 gb:AAA84874.1; (U34305) ORF6; Method: conceptual translation; E=4e-14.
  
     0.654
RB4014
Probable acetyl xylan esterase; PMID: 10846217 best DB hits: BLAST: embl:CAB55348.1; (AJ238716) acetyl xylan esterase [Ruminococcus; E=5e-07.
  
     0.593
RB9732
Probable gluconolactonase precursor-hypothetical secreted or membrane associated protein; Best DB hits: BLAST: pir:B82698; gluconolactonase precursor XF1297 [imported] - Xylella; E=4e-05 embl:CAB59581.1; (AL132662) possible gluconolactonase precursor; E=0.028 pir:B83340; hypothetical protein PA2451 [imported] - Pseudomonas; E=0.036 COG: XF1297; COG3386 Uncharacterized protein; E=4e-06 PA2451; COG2382 Enterochelin esterase and related enzymes; E=0.003.
  
     0.587
RB12035
Hypothetical protein.
  
     0.584
RB7871
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12004073.
  
     0.566
RB6799
Hypothetical protein-transmembrane prediction.
  
    0.563
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.