Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12928Conserved hypothetical protein-putative beta-lactamase or penicillin-binding protein; PMID: 9324260 best DB hits: BLAST: pir:T35155; hypothetical protein SC5A7.06c SC5A7.06c - Streptomyces; E=2e-36 gb:AAF26905.1; AF210843_2 (AF210843) unknown [Sorangium; E=9e-34 swissprot:Q11037; YD67_MYCTU HYPOTHETICAL 41.3 KDA PROTEIN RV1367C; E=4e-31 COG: Rv1367c; COG1680 Beta-lactamase class C and other penicillin binding; E=3e-32. (382 aa)    
Predicted Functional Partners:
RB7510
Hypothetical 460 kDa protein IN FEUA-SIGW intergenic region [Precursor]; PMID: 94281248 PMID: 8011666 PMID: 97419514 PMID: 9274029 best DB hits: BLAST: swissprot:P40407; YBBC_BACSU HYPOTHETICAL 46.0 KDA PROTEIN IN; E=6e-75 ddbj:BAB04393.1; (AP001509) BH0674~unknown conserved protein; E=3e-71 pir:G81651; conserved hypothetical protein TC0894 [imported] -; E=5e-47.
    0.791
RB12926
Hypothetical protein.
       0.561
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
  
 0.512
RB12925
Hypothetical protein.
       0.470
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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