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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12932Hypothetical protein. (75 aa)    
Predicted Functional Partners:
RB12934
Conserved hypothetical protein-putative enzyme with TIM-barrel fold; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.697
RB12936
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:H75280; conserved hypothetical protein - Deinococcus radiodurans; E=5e-27 swissprot:P71551; Y959_MYCTU HYPOTHETICAL 74.6 KDA PROTEIN RV0959; E=5e-21 gb:AAB89815.1; (AE001004) A. fulgidus predicted coding region; E=0.013 COG: AF1444; COG2304 Protein containing von Willebrand factor (vWF) type; E=0.001.
       0.480
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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