STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12934Conserved hypothetical protein-putative enzyme with TIM-barrel fold; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (253 aa)    
Predicted Functional Partners:
RB9955
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.78.
  
  
 0.774
RB12932
Hypothetical protein.
       0.697
rlmN
Conserved hypothetical protein-putative Fe-S-oxidoreductase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
     0.619
capB
Capsule biosynthesis protein CapB; PMID: 2536679 best DB hits: BLAST: swissprot:P19580; CAPB_BACAN CAPB PROTEIN ----- pir: A30091; E=7e-53 gb:AAF13663.1; AF188935_61 (AF188935) pXO2-58 [Bacillus anthracis]; E=7e-53 pir:F70069; poly-gamma-glutamic synthesis pgsB protein - Bacillus; E=4e-50.
  
    0.599
RB6963
Conserved hypothetical protein-putative Fe-S-cluster redox enzyme; PMID: 10360571 best DB hits: BLAST: pir:G72218; conserved hypothetical protein - Thermotoga maritima; E=5e-45 pir:T02275; hypothetical protein T13D8.12 - Arabidopsis thaliana; E=3e-44 pir:H70337; conserved hypothetical protein aq_416 - Aquifex aeolicus; E=3e-43 COG: TM1715; COG0820 Predicted Fe-S-cluster redox enzyme; E=4e-46; Belongs to the radical SAM superfamily. RlmN family.
 
     0.560
rpmC
Probable 50S ribosomal protein L29; PMID: 4018095 best DB hits: BLAST: embl:CAB82078.1; (AL161803) 50S ribosomal protein L29; E=3e-04 swissprot:O32989; RL29_MYCLE 50S RIBOSOMAL PROTEIN L29 -----; E=4e-04 swissprot:P95057; RL29_MYCTU 50S RIBOSOMAL PROTEIN L29 -----; E=0.002 COG: Rv0709; COG0255 Ribosomal protein L29; E=2e-04 PFAM: PF00831; Ribosomal L29 protein; E=2e-14; Belongs to the universal ribosomal protein uL29 family.
   
    0.555
rpmJ
Probable ribosomal protein L36; PMID: 9929392 best DB hits: BLAST: gb:AAC35721.1; (AF041468) ribosomal protein L36 [Guillardia; E=8e-07 pir:D82269; probable ribosomal protein L36 VC0879 [imported] -; E=1e-05 pir:B83196; conserved hypothetical protein PA3600 [imported] -; E=7e-05 COG: VC0879; COG0257 Ribosomal protein L36; E=9e-07 PFAM: PF00444; Ribosomal protein L36; E=6.9e-09; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.547
rplX
Probable 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
    0.547
RB12936
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:H75280; conserved hypothetical protein - Deinococcus radiodurans; E=5e-27 swissprot:P71551; Y959_MYCTU HYPOTHETICAL 74.6 KDA PROTEIN RV0959; E=5e-21 gb:AAB89815.1; (AE001004) A. fulgidus predicted coding region; E=0.013 COG: AF1444; COG2304 Protein containing von Willebrand factor (vWF) type; E=0.001.
       0.527
hemN-2
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
     0.457
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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