STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12965Hypothetical protein-signal peptide prediction. (223 aa)    
Predicted Functional Partners:
RB12968
Hypothetical protein-signal peptide and transmembrane prediction.
       0.547
rlmN
Conserved hypothetical protein-putative Fe-S-oxidoreductase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.486
RB10934
Best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=1e-05 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.032 COG: PA4738; COG3237 Uncharacterized BCR; E=1e-06; Belongs to the UPF0337 (CsbD) family.
  
    0.479
RB4474
Conserved hypothetical protein; PMID: 8265357 best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=3e-06 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.35 COG: PA4738; COG3237 Uncharacterized BCR; E=3e-07; Belongs to the UPF0337 (CsbD) family.
  
    0.479
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.