STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13002Conserved hypothetical protein-putative glutaminyl cyclase; PMID: 10731132 best DB hits: BLAST: gb:AAF50733.1; (AE003564) CG10487 gene product [Drosophila; E=0.003 ddbj:BAA34290.1; (AB014769) glutaminyl cyclase [Bothrops; E=0.005 embl:CAA50438.1; (X71125) glutaminyl-peptide cyclotransferase; E=0.44. (389 aa)    
Predicted Functional Partners:
RB10665
Hypothetical protein; Best DB hits: BLAST: ddbj:BAB03764.1; (AP001507) signal peptidase-like protein; E=0.87.
  
     0.470
RB10799
Hypothetical protein-putative transmembrane protein.
  
     0.462
RB8077
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.437
RB1699
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.403
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.