STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13005Conserved hypothetical protein; PMID: 8905232 best DB hits: BLAST: swissprot:P77234; YBEQ_ECOLI HYPOTHETICAL 37.3 KDA PROTEIN IN; E=8e-40 gb:AAD41587.1; AF057704_3 (AF057704) enhanced entry protein EnhC; E=1e-37 pir:T46587; hypothetical protein [imported] - Vogesella indigofera; E=1e-35 COG: ybeQ; COG0790 TPR repeat proteins; E=7e-41. (604 aa)    
Predicted Functional Partners:
flgE
Flagellar hook protein FlgE; PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10.
   
 
 0.896
flgC
Flagellar basal-body rod potein FlgC; PMID: 2129540 PMID: 2404955 PMID: 11677608 best DB hits: BLAST: swissprot:Q57466; FLGC_BORBU FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=2e-18 gb:AAC45656.1; (U82214) FlgC [Proteus mirabilis]; E=4e-18 swissprot:P16438; FLGC_SALTY FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=1e-17 COG: BB0293; COG1558 Flagellar basal body rod protein; E=2e-19 PFAM: PF00460; Flagella basal body rod protein; E=0.001; Belongs to the flagella basal body rod proteins family.
   
 
 0.841
RB9228
Hypothetical protein.
    
 0.771
RB9766
Putative ATPase; PMID: 11544236 best DB hits: BLAST: gb:AAK02043.1; AF261825_12 (AF261825) putative ATPase [Salmonella; E=3e-67 swissprot:P55530; Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY; E=2e-41 gb:AAA64864.1; (U23723) orf300 [Escherichia coli]; E=9e-32 COG: HP1069; COG0465 ATP-dependent Zn proteases; E=4e-24 AF0477; COG0464 ATPases of the AAA+ class; E=3e-23 Cj1116c; COG0465 ATP-dependent Zn proteases; E=5e-22 PFAM: PF00406; Adenylate kinase; E=0.57 PF00071; Ras family; E=0.09 PF01202; Shikimate kinase; E=0.028.
 
 
 0.694
hisS
histidyl-tRNA synthetase; PMID: 2991272 best DB hits: BLAST: swissprot:P56455; SYH_HELPY HISTIDYL-TRNA SYNTHETASE; E=5e-81 swissprot:Q9ZK27; SYH_HELPJ HISTIDYL-TRNA SYNTHETASE; E=1e-79 swissprot:O83647; SYH_TREPA HISTIDYL-TRNA SYNTHETASE; E=1e-73 COG: HP1190; COG0124 Histidyl-tRNA synthetase; E=5e-82 PFAM: PF00587; tRNA synthetase class II (G, H,; E=3.3e-08.
    
  0.668
flgB
PMID: 20437337 PMID: 1905667 best DB hits: BLAST: pir:C83510; flagellar basal-body rod protein FlgB PA1077; E=0.002 gb:AAD19729.1; (AF124349) flagellar basal-body rod protein; E=0.020 gb:AAF14367.1; AF133240_1 (AF133240) flagellar proximal rod; E=0.034 COG: PA1077; COG1815 Flagellar basal body protein; E=1e-04.
    
 
 0.660
RB404
Best DB hits: PFAM: PF01423; Sm protein; E=0.11.
  
 
 0.635
fliE
PMID: 1905667 best DB hits: BLAST: pir:G72263; flagellar hook-basal body complex protein FliE -; E=7e-05 swissprot:O67242; FLIE_AQUAE FLAGELLAR HOOK-BASAL BODY COMPLEX; E=1e-04 pir:E64714; flagellar hook-basal body complex protein - Helicobacter; E=0.002 COG: TM1366; COG1677 Flagellar hook-basal body protein; E=7e-06 PFAM: PF02049; Flagellar hook-basal body complex pr; E=1.9e-12.
    
 
 0.617
flgH
Probable flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
    
 
 0.608
RB8843
Probable stage V sporulation protein K-putative ATPase of the AAA family; Best DB hits: BLAST: embl:CAA72104.1; (Y11218) stage V sporulation protein K [Bacillus; E=1e-49 swissprot:O69733; Y2G8_MYCTU HYPOTHETICAL 62.4 KDA PROTEIN RV3868; E=1e-49 embl:CAB96009.1; (AL360055) hypothetical protein [Streptomyces; E=2e-49 COG: Rv3868; COG0464 ATPases of the AAA+ class; E=1e-50 slr0156; COG0542 ATPases with chaperone activity, ATP-binding domain; E=7e-05 AF0477; COG0464 ATPases of the AAA+ class; E=0.006 PFAM: PF00004; ATPase family associated with va; E=8.9e-22.
   
 0.606
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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