Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13007Hypothetical protein. (159 aa)    
Predicted Functional Partners:
RB13011
Hypothetical protein-transmembrane prediction.
       0.762
RB13013
Hypothetical protein-signal peptide and transmembrane prediction.
       0.497
RB13005
Conserved hypothetical protein; PMID: 8905232 best DB hits: BLAST: swissprot:P77234; YBEQ_ECOLI HYPOTHETICAL 37.3 KDA PROTEIN IN; E=8e-40 gb:AAD41587.1; AF057704_3 (AF057704) enhanced entry protein EnhC; E=1e-37 pir:T46587; hypothetical protein [imported] - Vogesella indigofera; E=1e-35 COG: ybeQ; COG0790 TPR repeat proteins; E=7e-41.
       0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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