STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1302Hypothetical protein. (198 aa)    
Predicted Functional Partners:
RB1304
Hypothetical protein-transmembrane prediction.
       0.732
RB1305
Hypothetical protein-transmembrane prediction.
       0.732
RB1308
Probable phytoene dehydrogenase; PMID: 2263648 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=1e-09 swissprot:P22871; CRTI_ERWHE PHYTOENE DEHYDROGENASE (PHYTOENE; E=4e-05 gb:AAA64981.1; (M87280) phytoene dehydrogenase [Erwinia; E=4e-05 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-06 PFAM: PF01134; Glucose inhibited division prot; E=0.017 PF01593; Flavin containing amine oxidase; E=0.08 PF00732; GMC oxidoreductases; E=0.049.
       0.732
RB1310
ABC-type multidrug transport system, ATPase component; PMID: 2229036 best DB hits: BLAST: pir:B72334; ABC transporter, ATP-binding protein - Thermotoga; E=8e-34 gb:AAG19180.1; (AE005015) ABC transporter, ATP-binding protein; E=4e-33 embl:CAC11214.1; (AL445063) gliding motility protein (gldA); E=5e-33 COG: TM0793; COG1131 ABC-type multidrug transport system, ATPase; E=8e-35 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-26 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.0013 PF00005; ABC transporter; E=6.1e-52.
       0.732
RB1311
Hypothetical protein-transmembrane prediction.
       0.732
RB1301
Hypothetical protein.
       0.570
RB1316
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF00672; HAMP domain; E=0.45.
       0.435
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.