Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RB13035Hypothetical protein-transmembrane prediction. (321 aa)    
Predicted Functional Partners:
RB13032
Conserved hypothetical protein-putative permease; PMID: 9384377 best DB hits: BLAST: pir:E69759; hypothetical protein ycgR - Bacillus subtilis -----; E=5e-06 ddbj:BAB05237.1; (AP001512) BH1518~unknown conserved protein; E=2e-04 pir:H70420; conserved hypothetical protein aq_1388 - Aquifex; E=6e-04 COG: BS_ycgR; COG0701 Predicted permeases; E=4e-07.
       0.773
RB13037
MoxR-related protein; PMID: 10567266 best DB hits: BLAST: pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=2e-67 pir:B71126; hypothetical protein PH0776 - Pyrococcus horikoshii; E=2e-67 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=8e-67 COG: TM1132; COG0714 MoxR-like ATPases; E=2e-68 PFAM: PF00004; ATPase family associated with va; E=0.00018 PF01078; Magnesium chelatase, subunit Chl; E=1.5e-09.
       0.773
RB13038
Conserved hypothetical protein-putative transglutaminase-like enzyme; PMID: 10452618 best DB hits: BLAST: pir:D75012; hypothetical protein PAB1274 - Pyrococcus abyssi (strain; E=3e-04 gb:AAB91268.1; (AE001110) A. fulgidus predicted coding region; E=0.006 pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=0.011 COG: PAB1274_1; COG1305 Transglutaminase-like enzymes, putative cysteine; E=4e-04 PFAM: PF02553; Cobalt transport protein compo; E=0.37 PF01841; Transglutaminase-like superfam; E=0.00013.
       0.773
RB13042
Best DB hits: BLAST: pir:T34965; probable membrane protein - Streptomyces coelicolor; E=3e-08 ddbj:BAB04451.1; (AP001509) BH0732~unknown conserved protein in; E=0.002 pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=0.012 COG: BH0732; COG1721 Uncharacterized ACR; E=1e-04 PFAM: PF01882; Protein of unknown function DUF58; E=7.1e-10.
       0.773
RB13044
Hypothetical protein-signal peptide and transmembrane prediction.
       0.615
RB13029
Hypothetical protein.
       0.558
RB13030
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.24.
       0.558
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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