STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13071Probable chromosome partitioning ATPase; PMID: 9054507 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=2e-12 embl:CAA06604.1; (AJ005576) MinD protein [Streptomyces griseus]; E=2e-10 embl:CAB92599.1; (AL356813) putative septum site-determining; E=4e-10 COG: DR0013; COG1192 ATPases involved in chromosome partitioning; E=2e-09 BH2436; COG0455 ATPases involved in chromosome partitioning; E=2e-07 HP0331; COG2894 Septum formation inhibitor-activating ATPase; E=4e-07 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.27. (402 aa)    
Predicted Functional Partners:
tadB-2
Probable protein secretion system or pilus assembly related protein TadB; PMID: 11029439 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=0.005 gb:AAD38173.2; AF152598_2 (AF152598) TadB [Actinobacillus; E=0.41.
 
  
 0.976
RB13073
Putative secretory protein; PMID: 7934814 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=2e-98 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=2e-92 gb:AAG33866.1; AF317389_1 (AF317389) putative type IV NTPase; E=4e-86 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-78 PFAM: PF01580; FtsK/SpoIIIE family; E=0.13 PF01443; Viral (Superfamily 1) RNA hel; E=0.067 PF00437; Bacterial type II secretion s; E=2.4e-24.
 
  
 0.957
cpaB
Probable pilus assembly protein CpaB; PMID: 10880436 best DB hits: BLAST: gb:AAF40191.1; AF229646_3 (AF229646) CpaB [Caulobacter crescentus]; E=0.003 pir:A70601; hypothetical protein Rv0990c - Mycobacterium; E=0.18.
 
  
 0.928
RB13077
Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) putative integral membrane protein; E=0.002.
 
  
 0.911
RB13066
Hypothetical protein-transmembrane prediction.
  
  
 0.909
tadB-3
Secretion system protein TadB; PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=2e-19 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=5e-12 embl:CAB92603.1; (AL356813) putative integral membrane protein; E=2e-09 COG: PA4301; COG2064 Predicted membrane protein; E=5e-13.
 
  
 0.899
tadB
Conserved hypothetical protein; PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=9e-20 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=6e-11 embl:CAB92603.1; (AL356813) putative integral membrane protein; E=7e-06 COG: PA4301; COG2064 Predicted membrane protein; E=5e-12.
 
  
 0.897
RB1149
Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=1e-08 embl:CAB92604.1; (AL356813) putative integral membrane protein; E=3e-06 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-04 COG: PAB1458; COG2064 Predicted membrane protein; E=6e-05.
 
  
 0.855
tadC
Probable secretion system protein TadC; PMID: 10880436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) putative integral membrane protein; E=6e-09 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-08 pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=3e-08 COG: PH0653; COG2064 Predicted membrane protein; E=3e-05.
 
  
 0.855
tadA
Secretion system protein TadA; PMID: 8438237 PMID: 11566992 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=1e-118 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=1e-108 gb:AAD38172.2; AF152598_1 (AF152598) TadA [Actinobacillus; E=1e-101 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-92 PFAM: PF00004; ATPase family associated with; E=0.6 PF01580; FtsK/SpoIIIE family; E=0.017 PF01443; Viral (Superfamily 1) RNA hel; E=0.48.
 
  
 0.821
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.