STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1308Probable phytoene dehydrogenase; PMID: 2263648 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=1e-09 swissprot:P22871; CRTI_ERWHE PHYTOENE DEHYDROGENASE (PHYTOENE; E=4e-05 gb:AAA64981.1; (M87280) phytoene dehydrogenase [Erwinia; E=4e-05 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-06 PFAM: PF01134; Glucose inhibited division prot; E=0.017 PF01593; Flavin containing amine oxidase; E=0.08 PF00732; GMC oxidoreductases; E=0.049. (504 aa)    
Predicted Functional Partners:
RB1588
Similar to acyl carrier protein; PMID: 8759840 best DB hits: BLAST: gb:AAB68774.1; (U94886) hemolysin [Brachyspira hyodysenteriae]; E=4e-04 embl:CAC08813.1; (AJ279022) putative acyl carrier protein; E=0.053 pir:T11213; probable acyl carrier protein - Streptomyces glaucescens; E=0.067.
 
     0.776
RB1304
Hypothetical protein-transmembrane prediction.
       0.773
RB1305
Hypothetical protein-transmembrane prediction.
       0.773
RB1310
ABC-type multidrug transport system, ATPase component; PMID: 2229036 best DB hits: BLAST: pir:B72334; ABC transporter, ATP-binding protein - Thermotoga; E=8e-34 gb:AAG19180.1; (AE005015) ABC transporter, ATP-binding protein; E=4e-33 embl:CAC11214.1; (AL445063) gliding motility protein (gldA); E=5e-33 COG: TM0793; COG1131 ABC-type multidrug transport system, ATPase; E=8e-35 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=1e-26 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.0013 PF00005; ABC transporter; E=6.1e-52.
       0.773
RB1311
Hypothetical protein-transmembrane prediction.
       0.773
fabI-2
trans-2-enoyl-ACP reductase; PMID: 20138198 best DB hits: BLAST: gb:AAF05840.1; AF197058_1 (AF197058) trans-2-enoyl-ACP reductase; E=6e-31 ddbj:BAB06562.1; (AP001516) enoyl-[acyl-carrier protein]; E=5e-29 gb:AAD04184.1; (L10036) unknown [Nostoc sp. PCC 7120]; E=2e-28 COG: BH2843; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); E=5e-30 TM0441; COG1028 Dehydrogenases with different specificities (related; E=1e-09 BS_yfhR; COG1028 Dehydrogenases with different specificities; E=1e-06 PFAM: PF00678; Short chain dehydrogenase/redu; E=7.1e-05.
 
     0.770
RB1302
Hypothetical protein.
       0.732
fabF
PMID: 8550484 best DB hits: BLAST: pir:T12022; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-50 pir:G81224; 3-oxoacyl-(acyl-carrier-protein) synthase II NMB0219; E=3e-48 pir:F81995; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=7e-48 COG: PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=1e-51 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=2.3e-05 PF02801; Beta-ketoacyl synthase, C-ter; E=7.8e-51; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.719
RB6596
Hypothetical protein.
  
     0.673
dhlA
Haloalkane dehalogenase; PMID: 3398051 PMID: 2026135 PMID: 8515812 best DB hits: BLAST: pir:C82615; haloalkane dehalogenase XF1965 [imported] - Xylella; E=2e-36 swissprot:Q50600; YJ33_MYCTU HYPOTHETICAL 32.2 KDA PROTEIN RV1833C; E=3e-23 pdb:1BEZ; Haloalkane Dehalogenase Mutant With Trp 175 Replaced; E=3e-19 COG: XF1965; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=2e-37 Rv1833c; COG0596 Predicted hydrolases or acyltransferases; E=3e-24 Rv2579; COG0596 Predicted hydrolases or acyltransferases (alpha/beta; E=1e-16 PFAM: PF00561; alpha/beta hydrolase fold; E=3.5e-20.
  
    0.652
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.