STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13080Conserved hypothetical protein; PMID: 8688087 best DB hits: BLAST: swissprot:Q58492; YA92_METJA HYPOTHETICAL PROTEIN MJ1092 -----; E=5e-07 swissprot:P76425; YOHM_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN; E=0.003 gb:AAG57167.1; AE005437_2 (AE005437) orf, hypothetical protein; E=0.019 COG: MJ1092; COG2215 Predicted membrane protein; E=5e-08. (235 aa)    
Predicted Functional Partners:
RB13084
Conserved hypothetical protein; PMID: 9537320 best DB hits: BLAST: pir:B70403; hypothetical protein aq_1194 - Aquifex aeolicus -----; E=3e-05 pir:G75360; conserved hypothetical protein - Deinococcus radiodurans; E=1e-04 pir:S74786; hypothetical protein slr1083 - Synechocystis sp. (strain; E=0.003.
 
     0.753
RB13077
Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) putative integral membrane protein; E=0.002.
       0.752
RB13078
Conserved hypothetical protein; PMID: 11298281 best DB hits: BLAST: gb:AAF81067.1; AF223364_2 (AF223364) unknown [Myxococcus xanthus]; E=8e-12 embl:CAB92612.1; (AL356813) putative secreted protein; E=6e-05 swissprot:Q9UZM5; Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 -----; E=0.006 COG: PAB0743; COG1430 Uncharacterized ACR; E=6e-04 PFAM: PF02643; Uncharacterized ACR, COG1430; E=4.1e-08.
       0.752
RB13082
Hypothetical protein.
       0.705
RB13086
Hypothetical protein.
       0.700
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
  
     0.651
RB4561
Beta-hexosaminidase; PMID: 8969205 PMID: 10220172 best DB hits: BLAST: pir:B82755; beta-hexosaminidase precursor XF0847 [imported] -; E=2e-35 swissprot:P96155; HEX1_VIBFU BETA-HEXOSAMINIDASE; E=4e-26 pir:A82301; beta-N-acetylhexosaminidase VC0613 [imported] - Vibrio; E=2e-25 PFAM: PF02838; Glycosyl hydrolase family 20,; E=0.00019 PF00728; Glycosyl hydrolase family 20,; E=5.3e-07.
  
     0.618
RB7455
Conserved hypothetical protein; PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1; (AE003803) CG6564 gene product [Drosophila; E=0.010 embl:CAA96576.1; (Z72495) ZP2 [Carassius auratus]; E=0.47.
  
     0.579
RB2797
Similar to cytochrome c-554 [precursor]; PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.003 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=0.003.
  
     0.546
RB5841
Best DB hits: BLAST: pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=2e-04 pir:D83558; transport protein ExbB2 PA0693 [imported] - Pseudomonas; E=0.002 gb:AAA59483.1; (L34155) epiligrin alpha 3 subunit [Homo sapiens]; E=0.009 COG: sll0222; COG1409 Predicted phosphohydrolases; E=0.002.
  
     0.512
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.