STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13088Hypothetical protein. (210 aa)    
Predicted Functional Partners:
RB13089
Hypothetical protein.
       0.773
RB13090
Probable monooxygenase; PMID: 8843436 best DB hits: BLAST: embl:CAB71851.1; (AL138667) putative monooxygenase. [Streptomyces; E=0.003 gb:AAB53030.1; (U62055) TrkA [Bacillus subtilis]; E=0.023 pir:E69725; potassium uptake trkA - Bacillus subtilis -----; E=0.023 COG: BS_trkA; COG2072 Predicted flavoprotein involved in K+ transport; E=0.002 PFAM: PF01134; Glucose inhibited division prot; E=0.5 PF02254; KTN NAD-binding domain; E=0.066 PF02032; Phytoene dehydrogenase related; E=0.88.
       0.773
RB13091
Conserved hypothetical protein-putative cobalamin synthesis protein CobW; PMID: 1655697 best DB hits: BLAST: pir:D82953; conserved hypothetical protein PA5535 [imported] -; E=1e-109 embl:CAC08207.1; (AJ278349) P44k protein [Rhodococcus sp. AJ270]; E=1e-101 pir:B69760; conserved hypothetical protein yciC - Bacillus subtilis; E=1e-98 COG: PA5535; COG0523 Putative GTPases (G3E family); E=1e-110 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.08 PF01495; HypB/UreG nucleotide-binding; E=0.026 PF02492; Cobalamin synthesis protein/P; E=9.1e-107.
       0.773
RB13092
Hypothetical protein.
       0.555
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.