STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13094Conserved hypothetical protein-putative cobalamin synthesis protein CobW; PMID: 1655697 best DB hits: BLAST: swissprot:P33030; YEIR_ECOLI HYPOTHETICAL 36.1 KD PROTEIN IN; E=1e-47 gb:AAG57311.1; AE005450_1 (AE005450) orf, hypothetical protein; E=8e-47 ddbj:BAA15982.1; (D90849) ORF_ID:o369#5; similar to [SwissProt; E=1e-44 COG: yeiR; COG0523 Putative GTPases (G3E family); E=1e-48 PFAM: PF01443; Viral (Superfamily 1) RNA hel; E=0.025 PF02492; Cobalamin synthesis protein/P; E=2.3e-13. (337 aa)    
Predicted Functional Partners:
RB13095
Hypothetical protein.
       0.773
rpsN
30 S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.628
mtsA
PMID: 7743991 best DB hits: BLAST: pir:B69992; ABC transporter (membrane protein) homolog ytgA -; E=7e-66 pdb:1TOA; A Chain A, Periplasmic Zinc Binding Protein Troa From; E=3e-50 gb:AAA92353.1; (U16363) Tromp1 [Treponema pallidum]; E=3e-50 COG: BS_ytgA; COG0803 ABC-type Mn/Zn transport system, periplasmic; E=7e-67 PFAM: PF01297; Periplasmic solute binding prot; E=3.6e-103; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.618
RB13093
Hypothetical protein-signal peptide and transmembrane prediction.
       0.512
efp-2
Translation elongation factor EF-P; PMID: 1956781 best DB hits: BLAST: swissprot:P33028; YEIP_ECOLI 30.9 KDA PROTEIN IN FRUB-SPR; E=3e-32 gb:AAG57309.1; AE005449_7 (AE005449) putative elongation factor; E=4e-32 pir:D82229; translation elongation factor EF-P VC1209 [imported] -; E=6e-31 COG: yeiP; COG0231 Translation elongation factor P/translation initiation; E=3e-33 VC1209; COG0231 Translation elongation factor P/translation; E=6e-32 efp; COG0231 Translation elongation factor P/translation initiation; E=4e-19 PFAM: PF01132; Elongation factor P (EF-P); E=1.9e-57.
 
      0.456
dksA
Probable dnaK (dksA-like) supressor protein; PMID: 2180916 best DB hits: BLAST: pir:E81429; dksA-like protein Cj0125c [imported] - Campylobacter; E=1e-09 pir:D71366; probable dnaK suppressor - syphilis spirochete -----; E=2e-06 pir:T35472; hypothetical protein SC6C5.01 SC6C5.01 - Streptomyces; E=8e-06 COG: Cj0125c; COG1734 DnaK suppressor protein; E=2e-10 PFAM: PF01258; Prokaryotic dksA/traR C4-type zi; E=3.2e-10.
  
  
 0.413
dksA-2
PMID: 2180916 best DB hits: BLAST: pir:D71366; probable dnaK suppressor - syphilis spirochete -----; E=1e-09 pir:T34677; hypothetical protein SC1A9.28c SC1A9.28c - Streptomyces; E=9e-07 pir:E81429; dksA-like protein Cj0125c [imported] - Campylobacter; E=5e-06 COG: TP0096; COG1734 DnaK suppressor protein; E=1e-10 PFAM: PF01258; Prokaryotic dksA/traR C4-type zi; E=5e-10.
  
  
 0.413
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.