STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13117Hypothetical protein; Best DB hits: BLAST: ddbj:BAB10342.1; (AB016872) contains similarity to two-component; E=0.63. (156 aa)    
Predicted Functional Partners:
livK
PMID: 97404404 best DB hits: BLAST: pir:T03460; probable leucineisoleucine/valine-binding protein; E=1e-36 pir:H75444; branched-chain amino acid ABC transporter, periplasmic; E=4e-04 pir:G75579; branched-chain amino acid ABC transporter, periplasmic; E=9e-04 COG: DR1038; COG0683 Periplasmic leucine/isoleucine/valine-binding; E=4e-05.
  
 
 0.891
ntrC-2
Probable nitrogen regulation protein; PMID: 2882477 best DB hits: BLAST: pir:H70558; hypothetical protein Rv1626 - Mycobacterium tuberculosis; E=3e-16 pir:T35758; probable response regulator - Streptomyces coelicolor; E=4e-15 pir:S52249; response regulator nasT - Azotobacter vinelandii -----; E=1e-12 COG: Rv1626; COG0784 CheY-like receiver domains; E=2e-17 glnG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-06 MTH447_1; COG0784 CheY-like receiver domains; E=2e-04 PFAM: PF00072; Response regulator receiver doma; E=0.0018.
      
0.773
RB13116
Hypothetical protein.
       0.661
RB13114
Hypothetical protein.
       0.495
RB13115
Hypothetical protein.
       0.495
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.