STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13132Hypothetical protein. (479 aa)    
Predicted Functional Partners:
RB13137
Hypothetical protein-transmembrane prediction.
 
     0.905
RB11276
Hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.775
RB12124
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: gb:AAF73802.1; AF154033_1 (AF154033) surface protein PspC; E=0.82.
  
     0.775
RB13124
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
RB2845
Hypothetical protein-transmembrane prediction.
  
     0.775
RB5326
Hypothetical protein.
  
     0.775
RB544
Best DB hits: PFAM: PF01239; Protein prenyltransferase alpha subu; E=0.28.
  
     0.775
RB6288
Hypothetical protein-signal peptide prediction.
  
     0.775
RB714
Probable chromosome segregation protein; PMID: 11016950 best DB hits: BLAST: gb:AAG18913.1; (AE004993) chromosome segregation; Smc1; E=0.010 COG: VNG0342G; COG1196 Chromosome segregation ATPases; E=0.001.
  
     0.775
RB7987
Hypothetical protein.
  
     0.775
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.