STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13189Transposase; PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)    
Predicted Functional Partners:
RB13190
Hypothetical protein.
       0.757
RB2182
Transposase; PMID: 8905231 best DB hits: BLAST: pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=1e-55 gb:AAB72024.1; (U38799) putative transposase [Synechocystis sp.]; E=7e-55 pir:S35005; probable transposase - Acetobacter xylinus insertion; E=1e-54 COG: sll1710; COG3293 Predicted transposase; E=9e-57 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31.
  
     0.655
RB9905
Probable transposase; Best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=5e-56 gb:AAD47597.1; AF144038_1 (AF144038) putative transposase; E=1e-55 pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=4e-55 COG: sll1710; COG3293 Predicted transposase; E=3e-56 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31.
  
     0.650
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
  
     0.608
RB13186
Putative subtilisin proteinase-like protein; PMID: 11544236 best DB hits: BLAST: gb:AAK02042.1; AF261825_11 (AF261825) hypothetical protein; E=1e-119 swissprot:P55381; Y4BN_RHISN HYPOTHETICAL 47.6 KD PROTEIN Y4BN; E=0.011 swissprot:P28842; SUBT_BACS9 SUBTILISIN PRECURSOR ----- pir:; E=0.14.
       0.572
RB5367
Putative DNA recombinase; PMID: 2105293 best DB hits: BLAST: gb:AAG60934.1; AF322013_53 (AF322013) ID556 [Bradyrhizobium; E=9e-68 gb:AAG60822.1; AF322012_127 (AF322013) ID270 [Bradyrhizobium; E=4e-67 swissprot:P17867; CISA_BACSU PUTATIVE DNA RECOMBINASE -----; E=1e-30 COG: BS_spoIVCA; COG1961 Site-specific recombinases, DNA invertase Pin; E=1e-31 pin; COG1961 Site-specific recombinases, DNA invertase Pin homologs; E=4e-04 PH1174; COG1961 Site-specific recombinases, DNA invertase Pin; E=0.003 PFAM: PF00239; Resolvase class of site-specific re; E=4.3e-18.
  
    0.520
RB11303
Transposase homolog; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16.
  
     0.439
RB4826
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16.
  
     0.439
RB1895
DNA-binding protein SMUBP-2; PMID: 7665561 best DB hits: BLAST: swissprot:Q60560; SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2; E=1e-100 gb:AAG28561.1; AF199411_1 (AF199411) antifreeze-enhancer binding; E=1e-99 gb:AAA70430.1; (L24544) DNA helicase [Homo sapiens]; E=1e-98 COG: aq_2057; COG1112 Superfamily I DNA and RNA helicases and helicase; E=1e-83 PFAM: PF00910; RNA helicase; E=0.63 PF00580; UvrD/REP helicase; E=0.54 PF00004; ATPase family associated with; E=0.0017.
  
    0.411
RB464
Hypothetical protein.
  
    0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.