Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB13228Hypothetical protein. (116 aa)    
Predicted Functional Partners:
recQ-2
ATP-dependent DNA helicase RecQ; PMID: 3027506 PMID: 2164680 best DB hits: BLAST: pir:E82351; ATP-dependent DNA helicase RecQ VC0196 [imported] -; E=1e-68 swissprot:P50729; RECQ_BACSU ATP-DEPENDENT DNA HELICASE RECQ; E=4e-65 gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=7e-65 COG: VC0196; COG0514 Superfamily II DNA helicase; E=1e-69 YNL112w; COG0513 Superfamily II DNA and RNA helicases; E=3e-13 PFAM: PF00270; DEAD/DEAH box helicase; E=1.2e-39 PF00271; Helicase conserved C-terminal doma; E=2e-23.
       0.773
RB13230
Hypothetical protein.
       0.773
RB13231
Hypothetical protein; Best DB hits: BLAST: embl:CAA72209.1; (Y11405) putative replicase-associated protein; E=0.65 embl:CAB44020.1; (AJ132180) Rep protein [faba bean necrotic; E=0.65 ddbj:BAA97561.1; (AB027511) replication initiator protein [milk; E=0.79.
       0.773
RB13224
Probable oxidoreductase-putative NAD-dependent nucleoside-diphosphate-sugar epimerase; Best DB hits: BLAST: pir:T36454; probable oxidoreductase - Streptomyces coelicolor; E=1e-110 pir:T51117; hypothetical protein [imported] - Brevibacterium linens; E=4e-66 gb:AAG55251.1; AE005268_4 (AE005268) putative dTDP-glucose enzyme; E=2e-55 COG: VC1632; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=2e-56 PH0378; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-05 slr0317; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=8e-05 PFAM: PF02716; Isoflavone reductase; E= [...]
       0.565
RB11942
Conserved hypothetical protein-putative acyltransferase; PMID: 7588751 best DB hits: BLAST: pir:S68196; hypothetical protein 9 - Myxococcus xanthus -----; E=5e-06 PFAM: PF01553; Acyltransferase; E=0.013.
  
     0.539
RB4405
Best DB hits: BLAST: pir:T36457; probable DNA-binding protein - Streptomyces coelicolor; E=2e-25 embl:CAB89026.1; (AL353870) hypothetical protein SC6F7.18c; E=0.002.
  
     0.488
RB11943
Phytoene dehydrogenase; PMID: 7588751 PMID: 2263648 best DB hits: BLAST: swissprot:P54979; CRTJ_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE; E=2e-50 embl:CAA66626.1; (X97985) ORF3 [Staphylococcus aureus]; E=2e-48 pir:T31463; probable diapophytoene dehydrogenase crtN -; E=9e-47 COG: VNG1684G; COG1233 Phytoene dehydrogenase and related proteins; E=4e-41 PFAM: PF01266; D-amino acid oxidase; E=7.4e-05 PF01494; FAD binding domain; E=1.7e-06 PF02254; KTN NAD-binding domain; E=0.026.
  
     0.417
RB3433
Conserved hypothetical protein-putative methylated-DNA-protein-cysteine methyltransferase; PMID: 9278503 best DB hits: BLAST: swissprot:P75707; YBAZ_ECOLI HYPOTHETICAL 14.4 KD PROTEIN IN; E=1e-04 gb:AAG54804.1; AE005224_9 (AE005224) orf, hypothetical protein; E=2e-04 embl:CAC16996.1; (AL450350) conserved hypothetical protein; E=3e-04 COG: ybaZ; COG0350 Methylated DNA-protein cysteine methyltransferase; E=1e-05 PFAM: PF01035; 6-O-methylguanine DNA methyltr; E=8.4e-05.
  
     0.413
RB10727
Manganese-containing catalase; PMID: 97094642 best DB hits: BLAST: ddbj:BAB05909.1; (AP001514) manganese-containing catalase; E=3e-62 swissprot:P80878; GS80_BACSU GENERAL STRESS PROTEIN 80 (GSP80); E=1e-61 pir:C69854; conserved hypothetical protein yjqC - Bacillus subtilis; E=2e-56.
  
     0.410
RB5734
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S75932; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-35 pir:B83298; conserved hypothetical protein PA2771 [imported] -; E=7e-07 pir:S76731; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-06 COG: sll0048_1; COG2203 GAF domain; E=2e-27 PFAM: PF01590; GAF domain; E=2.5e-09.
  
     0.410
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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