STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13231Hypothetical protein; Best DB hits: BLAST: embl:CAA72209.1; (Y11405) putative replicase-associated protein; E=0.65 embl:CAB44020.1; (AJ132180) Rep protein [faba bean necrotic; E=0.65 ddbj:BAA97561.1; (AB027511) replication initiator protein [milk; E=0.79. (352 aa)    
Predicted Functional Partners:
recQ-2
ATP-dependent DNA helicase RecQ; PMID: 3027506 PMID: 2164680 best DB hits: BLAST: pir:E82351; ATP-dependent DNA helicase RecQ VC0196 [imported] -; E=1e-68 swissprot:P50729; RECQ_BACSU ATP-DEPENDENT DNA HELICASE RECQ; E=4e-65 gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=7e-65 COG: VC0196; COG0514 Superfamily II DNA helicase; E=1e-69 YNL112w; COG0513 Superfamily II DNA and RNA helicases; E=3e-13 PFAM: PF00270; DEAD/DEAH box helicase; E=1.2e-39 PF00271; Helicase conserved C-terminal doma; E=2e-23.
       0.773
RB13228
Hypothetical protein.
       0.773
RB13230
Hypothetical protein.
       0.773
RB13224
Probable oxidoreductase-putative NAD-dependent nucleoside-diphosphate-sugar epimerase; Best DB hits: BLAST: pir:T36454; probable oxidoreductase - Streptomyces coelicolor; E=1e-110 pir:T51117; hypothetical protein [imported] - Brevibacterium linens; E=4e-66 gb:AAG55251.1; AE005268_4 (AE005268) putative dTDP-glucose enzyme; E=2e-55 COG: VC1632; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=2e-56 PH0378; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-05 slr0317; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=8e-05 PFAM: PF02716; Isoflavone reductase; E= [...]
       0.565
RB13222
Conserved hypothetical protein-putative secreted, membrane associated or paryphoplasmic protein; Best DB hits: BLAST: pir:B69020; hypothetical protein MTH115 - Methanobacterium; E=8e-16 ddbj:BAA96146.1; (AP002092) ESTs; E=4e-10 gb:AAD32774.1; AC007661_11 (AC007661) unknown protein [Arabidopsis; E=9e-09.
       0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.