STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB13237Best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=3e-04 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=0.003 pir:T32949; hypothetical protein C05G6.3 - Caenorhabditis elegans; E=0.51 COG: VCA0172; COG3035 Uncharacterized BCR; E=3e-05 PFAM: PF00092; von Willebrand factor type A domain; E=2.6e-08. (388 aa)    
Predicted Functional Partners:
RB13238
Hypothetical protein-transmembrane prediction; PMID: 9573173.
       0.776
RB13235
Hypothetical protein-transmembrane prediction.
       0.773
RB12048
Best DB hits: BLAST: pir:T49412; hypothetical protein B1D4.270 [imported] - Neurospora; E=0.89 PFAM: PF00432; Prenyltransferase and squalene ox; E=0.026.
  
     0.605
RB3479
Hypothetical protein-putative general secretory pathway protein; PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021.
  
     0.593
RB13234
Hypothetical protein.
       0.572
RB8077
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.569
RB1950
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.552
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
  
     0.550
RB9502
Best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=7e-49 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=3e-44 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=6e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=7e-50.
  
     0.549
RB9504
Best DB hits: BLAST: pir:D82493; conserved hypothetical protein VCA0171 [imported] -; E=9e-11 pir:C83262; hypothetical protein PA3074 [imported] - Pseudomonas; E=4e-10 gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.046 COG: VCA0171_1; COG3035 Uncharacterized BCR; E=2e-12.
  
     0.539
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.