STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13239Hypothetical protein-putative transmembrane protein. (196 aa)    
Predicted Functional Partners:
RB13241
Probable ECF-subfamily sigma factor; Best DB hits: BLAST: embl:CAC01348.1; (AL390975) putative ECF-subfamily sigma factor; E=2e-06 pir:H70507; probable sigE protein - Mycobacterium tuberculosis; E=7e-06 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=7e-06 COG: Rv1221; COG1595 DNA-directed RNA polymerase specialized sigma; E=7e-07 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=1e-09.
       0.773
RB13244
Hypothetical protein.
       0.773
RB13245
Hypothetical protein.
       0.553
RB13247
Hypothetical protein.
       0.477
RB13250
Hypothetical protein.
       0.477
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.