Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB13259Best DB hits: BLAST: pir:A72314; hypothetical protein TM0950 - Thermotoga maritima; E=3e-16. (634 aa)    
Predicted Functional Partners:
RB5280
Similar to extracellular sucrase; PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527; extracellular sucrase - Zymomonas mobilis ----- prf:; E=0.10 swissprot:Q60115; INVB_ZYMMO EXTRACELLULAR SUCRASE; E=0.24 gb:AAC36942.1; (L33403) extracellular sucrase [Zymomonas mobilis]; E=0.24.
  
     0.753
RB5282
PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=2e-32 swissprot:P31447; YIDJ_ECOLI PUTATIVE SULFATASE YIDJ -----; E=4e-27 gb:AAG58881.1; AE005599_13 (AE005599) putative sulfatase; E=8e-26 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=3e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=0.005 PFAM: PF00884; Sulfatase; E=1.1e-26.
  
     0.729
RB13146
Conserved hypothetical protein-putative xylosidase/arabinosidase; PMID: 8843436 best DB hits: BLAST: embl:CAB61805.1; (AL133236) hypothetical protein SCE65.17c; E=5e-41 ddbj:BAB05597.1; (AP001513) BH1878~unknown conserved protein; E=0.003 gb:AAB97967.1; (AF040720) xylosidasearabinosidase [Selenomonas; E=0.010; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.713
RB3123
Probable glycosyl hydrolases-putative kappa-carrageenase precursor; PMID: 98242082 best DB hits: BLAST: gb:AAF21820.1; AF098954_1 (AF098954) beta-agarase A precursor; E=1e-08 pir:T18265; endo-1,3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium; E=2e-08 embl:CAC27412.1; (AJ307315) endo-1,3(4)-beta-glucanase; E=2e-08 COG: TM0024; COG2273 Beta-glucanase/Beta-glucan synthetase; E=5e-09 PFAM: PF00722; Glycosyl hydrolases family 16; E=0.15 PF02018; Cellulose binding domain; E=3.1e-05.
 
   
 0.703
fucA
alpha-L-fucosidase; PMID: 2803312 PMID: 2894306 best DB hits: BLAST: pir:B82515; alpha-L-fucosidase XF2714 [imported] - Xylella; E=4e-71 embl:CAC24067.1; (AL512981) Hypothetical [Sulfolobus; E=3e-67 pir:S10235; alpha-L-fucosidase (EC 3.2.1.51) precursor - rat; E=8e-51 PFAM: PF01120; Alpha-L-fucosidase; E=4.4e-27.
 
     0.701
RB1470
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02018; Cellulose binding domain; E=0.61.
  
     0.676
RB5313
Conserved hypothetical protein-putative ATP binding protein; PMID: 10360571 best DB hits: BLAST: pir:F72395; hypothetical protein TM0280 - Thermotoga maritima; E=1e-102 gb:AAG58726.1; AE005584_8 (AE005584) orf; hypothetical protein; E=2e-82 ddbj:BAB05596.1; (AP001513) BH1877~unknown conserved protein in; E=6e-15.
  
     0.620
RB198
N-acetylgalactosamine-4-sulfatase precursor; PMID: 2303452 best DB hits: BLAST: gb:AAF49302.1; (AE003522) CG5584 gene product [Drosophila; E=3e-35 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-34 gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-33 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=6e-28 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-07 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00884; Sulfatase; E=1.5e-40.
  
     0.615
RB12431
Probable sulfatase; PMID: [EscherichiacoliO157:H7] best DB hits: BLAST: gb:AAF32278.1; (AF211192) SULF1 [Drosophila melanogaster]; E=7e-13 gb:AAG58881.1; AE005599_13 (AE005599) putative sulfatase; E=1e-12 gb:AAF55296.1; (AE003712) Sulf1 gene product [Drosophila; E=8e-12 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=3e-12 PFAM: PF00884; Sulfatase; E=5.6e-14.
  
     0.605
kel
Ring canal kelch protein; PMID: 8453663 PMID: 9118811 best DB hits: BLAST: gb:AAF53651.1; (AE003657) kel gene product [Drosophila; E=8e-17 swissprot:Q04652; KELC_DROME RING CANAL KELCH PROTEIN [CONTAINS:; E=8e-17 gb:AAA53471.1; (L08483) ring canal protein [Drosophila; E=1e-15 PFAM: PF01344; Kelch motif; E=2.6e-07.
  
     0.584
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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